Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00874 ATGGCTAACAACTTGGGACTATCCTCAATCCTCTTCTCGCTTCTCTTCTTCTCTTTGACCATTGAAACTAGTTTGGGAGCTCGTAATTTGAATGAAAATGTGTTAGATTGGGTGAAGAAGGACCATCGTCGTTTTCTTCGTGCTGTTATTCATGTCTCTGATCTCGACCATTCTATCAAAGTTTACACGCGAGGCTTTGGAATGAAGCTTTTGAAGAGAAGGAACTTTCCAGATCGTGGCTATAAAGATGCCCTTGTTGGATTTGGACCTCAAAACACCCACTTTTTGTTGGAACTCAGACAAAGGGATGGATTGAGCAATGTATTTATAGGTACAGAGTTTGGGCACTTTGGAATTGCTACTCAAAATGTCTACAAATCTGTGGAGCAAGCTCGAGCAAATGGCGCAGTGGTAATTCATGAACCCGAAAAAGTTAACCAAACTATATTCGCATTCGTGCAAGATCACGATGGGTATAAGTTCAAGTTCATCCAAACCCCCTCACCCCTTGACCCTCTCTCCCCAATAATGCTTCGTGTACAAAATTTGGATCTCTCCGCTAACTTCTACTCAAAGGCATTGGGGATGAAACTCTTTAAGAGGCAAAACAATTCAACAGGAGAGTTTATACGGGCTACATTGGGCTATGGAACAAACCAAAGTAAAACCACCTTGCTCGAATTGGAAAAAAGAAATAACATCTCTCGTGATGATGGACGGGATGGCTATTCAATGCTTTATATTAGTACTGACAACGTAAACAAGACGGCTGAAGCTGCTAAAGTGGTAATCAAAGAGCTTGGTGGGAACCTAATCATGGAGCCAGTTTTGGTGCCTACCATTAACGTCAAAATGACTGGATTTACTGACCCAGATGGGTGGAAATTGATTATGGTGGACAACAAAGATTACCGAAGAGGAACGCTTTAG 930 41.94 MANNLGLSSILFSLLFFSLTIETSLGARNLNENVLDWVKKDHRRFLRAVIHVSDLDHSIKVYTRGFGMKLLKRRNFPDRGYKDALVGFGPQNTHFLLELRQRDGLSNVFIGTEFGHFGIATQNVYKSVEQARANGAVVIHEPEKVNQTIFAFVQDHDGYKFKFIQTPSPLDPLSPIMLRVQNLDLSANFYSKALGMKLFKRQNNSTGEFIRATLGYGTNQSKTTLLELEKRNNISRDDGRDGYSMLYISTDNVNKTAEAAKVVIKELGGNLIMEPVLVPTINVKMTGFTDPDGWKLIMVDNKDYRRGTL 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6589090 6591966 + Carg27295-RA Car16g00874 164026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00874 309 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 175 296 IPR004360 -
Car16g00874 309 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 48 163 IPR004360 -
Car16g00874 309 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 172 301 IPR037523 -
Car16g00874 309 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 44 166 IPR037523 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00874 K01759 GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5] - csv:101203268 462.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00874 Car-Chr16:6589090 Car18g00277 Car-Chr18:1631623 1.03E-08 dispersed
Car16g00874 Car-Chr16:6589090 Car03g00491 Car-Chr3:5092421 5.42E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008029 0 2 0 0 0 2 1 2 2 1 2 2 1 1 2 1 2 0 1 2 2 1 2 0 2 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00874 Car_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0