Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00883 ATGAGAAGAGGGAGAGGGGCGGCGACGGCGACGGCTGCGGCGCGTGAGGCAGCACCTCCCGGATCGGAGAGGAGATACAGAGGAGTTCGAAAGCGGCCATGGGGTAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTATGGCTAGGAACCTTCGATTCCGCCGAGGACGCCGCCCGTGCTTACGACAACGCCGCTATAACCCTCCGTGGACCTAAAGCTAAAACCAACTTCCCTCTCGCTAATCCAATCTCGTTTTTCGATTACCCTCCTTATCCTCACCCTCACCCGCACCCTCATCCCGTCAACGCTCCAGATCCCTTCCTCGATCCTCGATTTCAGATTAATAACCCTCACAGACCTACTTCTAGCAGTTTGAGCTCTACCGTCGAATCCTTCAGTGGTCCCCACCCTCCTTCTGCCGCTGCTACAACCGCTTCTCCCTCCCGCCGCTACCCACGCACGCCGCCTCTCCTCCCTGAGGATTGTCATAGCGACTGCGATTCCTCCTCCTCCGTCATCGACGACGGAGACGACATCGCTTCCTCCTCCATGATCCCTCGGAAATCCCCTCTGCCGTTCGATCTGAACATTCCACCCTCCGAACTTCTTGATTTGGCCGCCGATGATCTTGGATGTACCGCCTTGTGCCTCTGA 666 57.66 MRRGRGAATATAAAREAAPPGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLANPISFFDYPPYPHPHPHPHPVNAPDPFLDPRFQINNPHRPTSSSLSSTVESFSGPHPPSAAATTASPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSMIPRKSPLPFDLNIPPSELLDLAADDLGCTALCL 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6806077 6806742 + Carg27286-RA Car16g00883 164035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00883 221 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Car16g00883 221 MobiDBLite consensus disorder prediction 119 154 - -
Car16g00883 221 MobiDBLite consensus disorder prediction 1 27 - -
Car16g00883 221 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Car16g00883 221 MobiDBLite consensus disorder prediction 100 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01622 Car-Chr11:12854900 Car16g00883 Car-Chr16:6806077 2.58E-43 dispersed
Car16g00883 Car-Chr16:6806077 Car20g00207 Car-Chr20:1191194 5.01E-49 dispersed
Car16g00883 Car-Chr16:6806077 Car06g00732 Car-Chr6:4705517 6.21E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4975 PF00847 AP2 5.20E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00883 K09286 - csv:101219993 274.248