Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00886 ATGGCGGTGGCAGATATACAAAATCCTCTTCAAGGAGAAACCACATGCGGTACCCTATTGCAGAAACTGCAAGAAATTTGGGATGAAGTTGGTGAAAGTGATAAGGAACGAGATAAAATGCTGCTTCAGATAGATCAGGAATGTTTGGATGTCTACAAAAGGAAAGTTGAGCAAGCTGATAAGTCCAGGGCAAAGCTTCTGCAGTCTTTATCAGACGCAAAGCTTGAGCTTTCCAGTCTTCTATCTGCTCTTGGTGAAAAAAGTTTTTCTGAATTTCCTGAGAAGGCTTCTGGAACAATCAAAGAACAGCTTGCAGCCATAGCACCGGCTCTCGAACAGCTCTGGAAACAGAAAGAACAGAGGGTTAAGGAATTTTTTGATGTTCAATCAGAGATTCAGAAGATATGTGGGGAGATTTCTGGGAGTTTAAACCTTAGCGAGAATCCAGTGGTAGATGAATCTCATCTTTCGGTAGAAAAGCTCGACGAATACCATTGCCAACTCCAGGAACTGCAGAAAGAAAAGAGTGATAGATTGCACAAAGTTCTTGAATTTGTGAGCACCGTGCATGATCTCTGTGCCGTCCTTGGAATCGATTTCTTTGCTACTGTAACTGAGGTTCACCCAAGCTTAAATGACGCAACTGGTGTGCAATCTAAAAGCATTAGCAATGACACTTTATCCAAGCTGGCAAAGATGGTCTTAGCACTGAAAGAAGATAAAAAGCAGAGGCTACATAAGCTCCAAGAATTGGCAACTCAGCTGATTGATCTTTGGAATTTAATGGACACCCCCTCGGAGGAAAGAAGTTTGTTTGACCATGTCACGTGTAACATATCAGCATCAGTAGATGAAGTGACTGTCCCAGGGGCGCTTGCTCTCGATTTGATTGAGCAGGCTGAGGTGGAGGTTGAGAGGCTTGATCAACTCAAGGCTAGTAAGATGAAGGAAATTGCATTCAAGAAGCAGTCTGAACTTGAAGAGATATTTTCTCATGCTCACATAGAAGTAGACCCAGATGCAGCTCGAGACAAAATTATGGCACTGATTGATTCTGGTAACGTTGAGCCTGCTGAATTACTGGATGACATGGACGATCAAATAGCAAAGGCCAAAGAAGAAGTTCTCAGCAGGAAAGAAATATTGGACAAGGTTGAAAAATGGATGCTAGCATGTGAAGAAGAGAGCTGGCTAGAAGACTACAATCGGGATGATAACAGGTATAATGCTAGCAGAGGGGCTCATCTGAATCTCAAGCGAGCAGAGAAAGCTAGAATTCTGGTCAACAAAATTCCAGCTCTTGTTGACACTTTGATTGCCAAAACTCGGGCTTGGGAGGAAGATCGTGGCATATCGTTTATCTACGACGGCGTTCCTCTCCTTGCTATGCTAGACGAATATACCATGCTCAGGCATGAAAGGGAGGAAGAAAAACGACGATCGAGGGACCAGAAAAAATTCCATGAACAACAAAGCACAGACCAAGAGACCATCACCAATCCAAGGCCTAGCCCTGTTCGACCCGTTGGTACAAAGAAGGCAGCAGGGCCTCGTGCAAATGGAGCCGCGAACGGAACACCTAGCAGCAGACGGTTATCACTGAATCAGAATGGATCTAGATCAATGAATAAAGATGGAAGAAGGGATAGTATGAGACCAATGACACCCGTGAAGTACGATGCAATCTCGAAAGAAGACTCTGCATCGCACTTTTCAGGTACGGAGCCTGTTTCATCCTCACCATGA 1746 44.16 MAVADIQNPLQGETTCGTLLQKLQEIWDEVGESDKERDKMLLQIDQECLDVYKRKVEQADKSRAKLLQSLSDAKLELSSLLSALGEKSFSEFPEKASGTIKEQLAAIAPALEQLWKQKEQRVKEFFDVQSEIQKICGEISGSLNLSENPVVDESHLSVEKLDEYHCQLQELQKEKSDRLHKVLEFVSTVHDLCAVLGIDFFATVTEVHPSLNDATGVQSKSISNDTLSKLAKMVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERSLFDHVTCNISASVDEVTVPGALALDLIEQAEVEVERLDQLKASKMKEIAFKKQSELEEIFSHAHIEVDPDAARDKIMALIDSGNVEPAELLDDMDDQIAKAKEEVLSRKEILDKVEKWMLACEEESWLEDYNRDDNRYNASRGAHLNLKRAEKARILVNKIPALVDTLIAKTRAWEEDRGISFIYDGVPLLAMLDEYTMLRHEREEEKRRSRDQKKFHEQQSTDQETITNPRPSPVRPVGTKKAAGPRANGAANGTPSSRRLSLNQNGSRSMNKDGRRDSMRPMTPVKYDAISKEDSASHFSGTEPVSSSP 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6940857 6946819 + Carg26941-RA Car16g00886 164038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00886 581 Coils Coil 238 258 - -
Car16g00886 581 MobiDBLite consensus disorder prediction 474 581 - -
Car16g00886 581 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 505 - -
Car16g00886 581 Coils Coil 297 317 - -
Car16g00886 581 Coils Coil 56 76 - -
Car16g00886 581 MobiDBLite consensus disorder prediction 522 541 - -
Car16g00886 581 MobiDBLite consensus disorder prediction 567 581 - -
Car16g00886 581 MobiDBLite consensus disorder prediction 474 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00886 K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein - csv:101217855 1044.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00070 Car-Chr12:304022 Car16g00886 Car-Chr16:6940857 1.66E-50 dispersed
Car12g00071 Car-Chr12:307228 Car16g00886 Car-Chr16:6940857 2.54E-75 dispersed
Car15g00828 Car-Chr15:4720769 Car16g00886 Car-Chr16:6940857 1.81E-178 dispersed
Car16g00153 Car-Chr16:862768 Car16g00886 Car-Chr16:6940857 5.48E-158 dispersed
Car15g01246 Car-Chr15:9666799 Car16g00886 Car-Chr16:6940857 2.39E-159 transposed
Car18g00758 Car-Chr18:8633588 Car16g00886 Car-Chr16:6940857 0 transposed
Car16g00886 Car-Chr16:6940857 Car06g00728 Car-Chr6:4646707 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g576 . Blo03g01459 . . . . . Bma13g01091 Cmo16g00948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00849 . Bda12g00935 . . . . . . . . Cma16g00913 . Car16g00886 Cpe14g00738 . . . . . . . . . . . . . . . . . Chy06g01848 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003979 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00886 Car_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Car16g00886 Car_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Car16g00886 Car_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Car16g00886 Car_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Car16g00886 Car_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0