Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00903 ATGAAGTCGAATACAGCAGAATCAATGGAGACTGGTTTCTTGGGAAGCATATCTGCCTCTTCCTTCCGAAACCTCCTTCCTCGATCCATCTCTTCTAAGAAAAAACTAATTTCCTCCTTTTCTAAGAAGCTTCCGCATTCAAATTCTGAAAATATGCCTCCTATTGATCCGAACATTCCTGTCAAGGACGACCGGATTTCCACGACCATTTCCAAGTCCGGTGTCCGGAATTCTCCTCACGATGCTTTGCCTCCAGATTCCAATCTTGATCTGAAGGATGAAGTTGTCCAATCAGACGGCCAGTATGAAGTTCCTACCCCTACTTATCAGCCGATTAAGGTTGTCGTGAGAATTAGACCTAATGATAGAGAGAAGGAAATGGACAGGACGGTGAAGAAGATTTCTTCAGATGAATTGACATTTCAGGACCGTAAATTTTCATTCGATTCAGTTTTCGATTCAGATTCGAAACAGGAAGATATCTTTTCGAAGATCGGAATTCCGCTAGTGAAAGATGCGTTAGCTGGTTATAACACTTCCATCATGTCATATGGTCAGACGGGAAGTGGTAAAACATTCACAATGTGGGGTCCCCCGAGTGCCATGGTTGAGGATCCTTCACCCTTTAGTAACCAAGGCCTTGCTCCTCGCATCTTTCAAATGCTGTTTTCAGAGATTCAAAAAGAACAAGAGAACTCTGAAGGAAAACTGATAAATTACCAGTGTCGTTGTTCTTTTGTTGAGATATTTAATGAACAAATTGGGGATTTGCTTGATCCTTCCCAGAGAAACCTTAAGATTAAGGATGATGCAAAGAATGGACTGTATGTGGAAAATGTCACAGAGGAATATGTGACAAGCTACGATGATGTAACTCAGATTCTTATCAAGGGACTTTCAAGTAGAAAGGTCGGAGCAACCACGATAAATTCTAAGAGCTCTAGGTCTCATATTGTGTTTACTTTCATCATTGAGTCATGGTGCAAGGAAGCTTCATCCAAGTGTTTTGGTAGTTCAAAGACGAGCAGAATCAACCTTGTTGATCTTGCTGGATTAGAAAGGAATGTAAGCGATGCCATGGGTAGACAATCCACAAGGGAAGACAAGATTTTGAAGAAGTCTATGTCACGGCTCGGGCACTTGATCGATTCACTAGCTAAAGAAACTGAATTAAGAACATCTGAAGAGCGTTTGTACAGAAGCTCCTGCTTGACCCATTTATTAAGAGAGTCATTTGGTGGCAACGCCAAGCTCACAGTTATTTGTGCTGTCTCTCCAGATAACAACTTTTCAGGTGAAACGTTAAGGACATTGAGATTCGGACAACGATTGAAATCAGTTCAGAATCGACCAGTCATAAATGAAATAAAGGAAGATGACGTAAATGATCTGAGTGATCAAATTCGTCAATTAAAGGAAGAACTTATAAGAGCAAATACCAACTCAGGAAAGTCAGTTCCAAAAACTGGCTACTTTCAAGGGCCTAATGTACGAGACAGCCTGAATCATTTAAGAGTTAATATCAATCGCTCTCTGATTTTGCCATGCATTGATAATGACTCAGACGAAGAGGTTAATTGTAACGAGGAAGATGTGATGGAATTGCATCAGCAACTGGATAAGGTCCATAGCTTTTCTGAAGATAGCTCTGATAATAGAGATTCACTTCAGTTTTCCTCCGTAGAAGAAAGTTTTGCTTCATGTTCAATGAGTGATGATGAAGTAAGTTATCCCCAAACAACTGAAGAAATAATCCCAGAAGAAATTTTTCATGATTCCAAGGTTCCTGAACCTGTGAAGAATCAGAGTATTTCTGTCAGCTCAATATGTCACTTCCCTAATCTTGAAGATCCACCATTGTCTGAGTCTCCGAAAATTGGAAATTCTCAAAGGAAAAGTTTGGTCGTTGCACCTAGTTTCGCTGACCACCATGAAAAGATGTCAGACAGCTTTAAGTTTAATAAAGATGTACTGAGGCAGTCATTGAGTCAGAGTAAGAACATCAGATCCTCTCTGCGATCGAGTAATACATTTGAAGATCCTACTGAGTCATTGGCAGCAAGTCTTCAAAGAGGTTTGAAGATAATTGATTATCACCAGCAAAGCTCAGCATTAAACAAATCTTCAGTATCCTTTTCCTTTGAACATCTGGCACGAAAATCATGTCCAGAAGTCAACAAACCTGTACCATCTCTTCAAACATTGGAAGAAGATAACCCCATCGCTATATCTTCTCCCCATCAGCTTTGTTCATCTTGTCAAAGAAGAATCACCAAGAATGACAATAGTTTAGTCCTGAGTAGCTCCAAGGAACTCGTAGGATTCAACGAGGGAAGGGATCTTGCGAAGAAGAGTGAACAAGAGAAATGTGAAATAAAGGAAGTGCAGGAGGTTCGGGACAATGAGAATAATGGCTTCAGTGATGTGTCTGAGAAGGAAGAACTTGTTAAAGAAATCCAAAATTTAAGGAGTAAGCTGCAGGCATTTGCTGATGTTTCAACTAACAAGTCAACTGACAAGCTGAGGTCCTCGCTATTGTTGTCACGGTCCATCCAACTAAGAAAAAGCGGTCTAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGTCAAACTATTAACGAGGAGGAACTTGAAAAGGAAAGGGAGAGATGGACAGAAATGGAGAGTGAATGGATTTCATTAACTGATGAACTGAGAGTCGATTTGGAATCCATTCGGCGGCGTGCAGAGAAGGTGGAGAATGAACTGAATTCAGAGAAGAAGTGCAATGAGGAGCTGGAGGATGCCCTTCACAGATCTGTTCTTGGACATGCTAGATTTGTTGAGCATTATGCTGAATTGCAAGAGAAATATAATGAGTTGGTGGGAAAGCACCGTGCCATCATGGGAGGGATAGCTGAGGTTAAAAGGGCTGCACAAAAAGCTGGTTCCAAAGGACATGGTTCTCGCTTTTCTAAATCCCTCGCTGCTGAGCTTTCAGCTCTGAGATTTGAGAGGGACAGAGAGAGAGAATTCTTGAAAAAGGAAAACAAAGGCCTCAAGGTTCAACTTAGAGACACTGCTGAAGCTGTCCATGCTGCTGGGGAACTTCTTGTTAGGCTTAGAGAAGCAGAACATTCAGCATCAGTTGCAGAGGAGAACTTTACATCAGTTCAACAAGAAAACGAGAAGTTGAAGAAGCAAATGGAGAAACTCAAAAGAAAGCATAAGATGGAGATGATTACAATGAAACAGTATCTTGCAGAGAGTAAATTGCCAGCTTCTGCTCTCGAACCACTGTATCATCAGGATCACTCCGACCTTGGAACCGACAAGAGAGCATCGTACGTAGACGATGATCAAGCTTGGAGATCAGAATTTGGAGCTATATATCAAGAGCAGCACTACTAA 3387 41.39 MKSNTAESMETGFLGSISASSFRNLLPRSISSKKKLISSFSKKLPHSNSENMPPIDPNIPVKDDRISTTISKSGVRNSPHDALPPDSNLDLKDEVVQSDGQYEVPTPTYQPIKVVVRIRPNDREKEMDRTVKKISSDELTFQDRKFSFDSVFDSDSKQEDIFSKIGIPLVKDALAGYNTSIMSYGQTGSGKTFTMWGPPSAMVEDPSPFSNQGLAPRIFQMLFSEIQKEQENSEGKLINYQCRCSFVEIFNEQIGDLLDPSQRNLKIKDDAKNGLYVENVTEEYVTSYDDVTQILIKGLSSRKVGATTINSKSSRSHIVFTFIIESWCKEASSKCFGSSKTSRINLVDLAGLERNVSDAMGRQSTREDKILKKSMSRLGHLIDSLAKETELRTSEERLYRSSCLTHLLRESFGGNAKLTVICAVSPDNNFSGETLRTLRFGQRLKSVQNRPVINEIKEDDVNDLSDQIRQLKEELIRANTNSGKSVPKTGYFQGPNVRDSLNHLRVNINRSLILPCIDNDSDEEVNCNEEDVMELHQQLDKVHSFSEDSSDNRDSLQFSSVEESFASCSMSDDEVSYPQTTEEIIPEEIFHDSKVPEPVKNQSISVSSICHFPNLEDPPLSESPKIGNSQRKSLVVAPSFADHHEKMSDSFKFNKDVLRQSLSQSKNIRSSLRSSNTFEDPTESLAASLQRGLKIIDYHQQSSALNKSSVSFSFEHLARKSCPEVNKPVPSLQTLEEDNPIAISSPHQLCSSCQRRITKNDNSLVLSSSKELVGFNEGRDLAKKSEQEKCEIKEVQEVRDNENNGFSDVSEKEELVKEIQNLRSKLQAFADVSTNKSTDKLRSSLLLSRSIQLRKSGLGGGGGGGGGCQTINEEELEKERERWTEMESEWISLTDELRVDLESIRRRAEKVENELNSEKKCNEELEDALHRSVLGHARFVEHYAELQEKYNELVGKHRAIMGGIAEVKRAAQKAGSKGHGSRFSKSLAAELSALRFERDREREFLKKENKGLKVQLRDTAEAVHAAGELLVRLREAEHSASVAEENFTSVQQENEKLKKQMEKLKRKHKMEMITMKQYLAESKLPASALEPLYHQDHSDLGTDKRASYVDDDQAWRSEFGAIYQEQHY 1128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7371523 7377395 - Carg22351-RA Car16g00903 164055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00903 1128 Coils Coil 1002 1022 - -
Car16g00903 1128 Coils Coil 894 928 - -
Car16g00903 1128 Coils Coil 454 481 - -
Car16g00903 1128 ProSiteProfiles Kinesin motor domain profile. 111 447 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car16g00903 1128 Coils Coil 1033 1074 - -
Car16g00903 1128 Coils Coil 812 832 - -
Car16g00903 1128 MobiDBLite consensus disorder prediction 37 90 - -
Car16g00903 1128 Pfam Kinesin motor domain 124 447 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car16g00903 1128 MobiDBLite consensus disorder prediction 37 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00903 K10400 KIF15; kinesin family member 15 - csv:101203593 1759.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01365 Car-Chr6:9816301 Car16g00903 Car-Chr16:7371523 5.32E-08 dispersed
Car14g01351 Car-Chr14:11399211 Car16g00903 Car-Chr16:7371523 1.54E-68 dispersed
Car16g00903 Car-Chr16:7371523 Car13g00120 Car-Chr13:1047099 1.72E-55 dispersed
Car16g00903 Car-Chr16:7371523 Car06g00586 Car-Chr6:3376690 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g604 . . . . Bpe09g00138 . Bma10g00586 Bma13g01105 Cmo16g00977 . . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1198 Cone15ag1218 . Csa03g00446 . Cme06g02803 Blo07g00875 . Bda05g00688 . . Bpe03g00762 . . . . . . Cma16g00939 . Car16g00903 Cpe14g00763 . Bhi11g00510 . . . . . . . . . . . . . Lsi05g00529 . Chy06g01871 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004807 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00903 Car_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 16.413685 8.471942 0.0 6.575915