Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00952 ATGGGGAGGACTGATGATAATGTTGCTCTTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTCTTCTCAGCAATGCAAATGCTAGAGGAGGATGTTGTTGGTTCTAGACCTACAATGGACACTACCAGCACTGATAAACCCGAAAAGATCTTTCTCGGGTCTCGAGAACACACGGTGTCTGAAAACGCCATTGCAAGAGGCGGGATCCCGGGTGTCAACTCTGGCGATCGGTCGATGGAGTTCGGTATGGTATCGGAGCAGAAATTCCGTGGGGGACTTGTGGAAAGGATTGCAGCAAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAACATTAGATCAACAGAGGAAGTGAAGTCTCCTTACTTGACAATACCGCCTGGTTTGAGTCCAACTACATTGCTTGATTCTCCAGTTTTTCTTTCAAATTCATTGGCTCAGCAATCTCCCACAACGGGAAAGTTCCCGTTTGTAGCGAACGTTAGTTATCGAAGCTCGACGATGATGTTGGAGGCGAACAATCGAGGCAACGACAATCCGTTCGATGATAACAGTTCATCGTTTGCTTTCAGACCGAGTGTGGAATCAGGATCATCATTTTTTCATGGTGCAGCAAGCAAAGTAATTTCACTTCCACAATCTTGTCCAAGAATTGAGGTTCCGGGTCTACGCTCAGAGAATTCTTATCAACCCGAAAATAGAATCAATCATCATCCTCAAATGGGGCTCTCTACGTCGTGCACAGAGAGGGACGATGGGGGTAAGAACGTGTTGGATGATCAAAGACCCTTTGATTCTGTGTGTGGTAGTGGTGGGGGTGGTGGTGAACATTCTTCACCGCTCGACGAGCAACTGGATGAAGGGGAGCAACGAGGCACTGGGGATTCAATGGCCGGTGGTGGTTGCGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTATCCTCGGAGTTATTACAAGTGCACACATCCGAACTGTCAGGTCAAGAAGAAGGTCGAGCGATCTCATGAAGGCCATATAACAGAGATCATCTATAAAGGAACGCATAACCACGTAAAACCCTCACCGAATCGACGAGCATCAGATTCCCATATCAATATGCAACAAGCAGGCCAACAGAATGCTGAAGTTCCCCTGTGGGAAGATTCACAAAAAGGGACTCCTGATTGGATGCATAGCAACCTTGAGGTGAGTTCTTCAGCATCATTGGGTCCTGAATATGGCAATCATATTGAAACAGTTGAGGCCATTGATGCCTCATCTACATTCTCTAATGATGAAGACGAAGATGATAGAGGAACACATGGAAGTATAACAATGGGATATGAGGGGGAAGGAGATGAATCCGAGTCGAAGAAAAGGAAACTCGACGCCTATGTAACGGAAATGAGTGGGGCTACTAGAGCTATCCGTGAGCCTAGAGTTGTTGTTCAGACTACTAGTGAAGTAGATATTCTCGACGATGGCTATCGTTGGCGTAAATACGGACAGAAGGTGGTGAAGGGAAATCCGAATCCTAGGAGTTACTACAAGTGCACGAATCCTGGCTGCACGGTGAGGAAGCATGTCGAGCGAGCGTCACATGACCTGAAGTCAGTGATAACCACATATGAAGGAAAGCACAATCACGATGTTCCTGCTGCTCGAAACAGCAGCCACATCGGTTCATGCACATCCAGTCCAGTAACGGGTCAAACCTCGACCGCTACTCATCATGCTCACAGGCCAGGGCCACCGCAGCCTCAAAACAACATGCCAAGATTCGAAAGGCCAGCCTTCGGCCTTGCTGGAAGACAACCGATGGGCACTGCCCATGCCCATGGCTTTGGTTTTGGTATGAACCAACCCGGACTGAGAAATCTAAACCTGACCATGACCATGGCATCAGCTGGTCAAGCCAAGCTTCCTGTTCTACCAATGCATCCATACTTGGCACAAGCACACAATGTTCATGAAATGGGTTTGTTGTTGCCTAAAGGTGAGCCCAATCTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACGGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGGCCTGAGATGTGA 2130 47.61 MGRTDDNVALIGDWVPPSPSPRTFFSAMQMLEEDVVGSRPTMDTTSTDKPEKIFLGSREHTVSENAIARGGIPGVNSGDRSMEFGMVSEQKFRGGLVERIAARAGFNAPRLNTENIRSTEEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFVANVSYRSSTMMLEANNRGNDNPFDDNSSSFAFRPSVESGSSFFHGAASKVISLPQSCPRIEVPGLRSENSYQPENRINHHPQMGLSTSCTERDDGGKNVLDDQRPFDSVCGSGGGGGEHSSPLDEQLDEGEQRGTGDSMAGGGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHVKPSPNRRASDSHINMQQAGQQNAEVPLWEDSQKGTPDWMHSNLEVSSSASLGPEYGNHIETVEAIDASSTFSNDEDEDDRGTHGSITMGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHIGSCTSSPVTGQTSTATHHAHRPGPPQPQNNMPRFERPAFGLAGRQPMGTAHAHGFGFGMNQPGLRNLNLTMTMASAGQAKLPVLPMHPYLAQAHNVHEMGLLLPKGEPNLEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7891861 7896439 + Carg25231-RA Car16g00952 164104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00952 709 Pfam WRKY DNA -binding domain 502 558 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car16g00952 709 Pfam WRKY DNA -binding domain 311 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car16g00952 709 MobiDBLite consensus disorder prediction 564 588 - -
Car16g00952 709 MobiDBLite consensus disorder prediction 230 255 - -
Car16g00952 709 MobiDBLite consensus disorder prediction 436 469 - -
Car16g00952 709 ProSiteProfiles WRKY domain profile. 311 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car16g00952 709 MobiDBLite consensus disorder prediction 227 315 - -
Car16g00952 709 ProSiteProfiles WRKY domain profile. 496 561 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car16g00952 709 MobiDBLite consensus disorder prediction 558 602 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01723 Car-Chr4:9876573 Car16g00952 Car-Chr16:7891861 5.09E-85 dispersed
Car04g02685 Car-Chr4:20835857 Car16g00952 Car-Chr16:7891861 1.23E-16 dispersed
Car06g00588 Car-Chr6:3389291 Car16g00952 Car-Chr16:7891861 2.26E-95 dispersed
Car11g00839 Car-Chr11:5035303 Car16g00952 Car-Chr16:7891861 1.83E-105 dispersed
Car14g00156 Car-Chr14:735118 Car16g00952 Car-Chr16:7891861 7.42E-59 dispersed
Car15g00249 Car-Chr15:1369138 Car16g00952 Car-Chr16:7891861 1.05E-15 dispersed
Car16g00907 Car-Chr16:7429862 Car16g00952 Car-Chr16:7891861 6.97E-14 dispersed
Car16g00952 Car-Chr16:7891861 Car18g01035 Car-Chr18:10686288 5.72E-85 dispersed
Car16g00952 Car-Chr16:7891861 Car10g00752 Car-Chr10:3971361 8.39E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4981 PF03106 WRKY 2.90E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00952 K18835 - csv:101207853 1122.46