Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00953 ATGGAGGATCACAATGAGGAAAACCATGATTTAGAATTGCAAGATGGCGATGAACTTCATCCAATGAGAACTAACAGTGGAAAACGCGGAGGGTTTCTGGATCTGTTTCATCATCTCAATCGAGGCGGCAGCTTTTCTGGTCGTCGTCTCAATTACAAGCGTCTTGAAACGGAGAATCATAGCGTTAATTTCAACCCTTCTTCTGTTAATATTGTCGGTAGAAATCGTACGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTCCGATCGTCACAACAATTCGCATTCTCTTCAAACCCCAACTGTAACCGATGGCGAAATCGACGACAATATCGATGATTCTGCCCCTCCTGAATGGGCTTTGCTCCTTATTGCCTGTCTTCTTGGTCTCGCCACCGGTCTTTGCGTTGCAGCTTTTAACATTGGGGTACATGTAATCCATGAATGGGCTTGGGCTGGCACTCCAAATGAGGGTGCTGCTTGGCTTCGCTTACAGAGAATAGCTGATACATGGCATCGCATTCTCTTGATACCAGTAACTGGAGGTGTTATAGTGGGTATGATGCATGGTTTGCTTGAGATACTCAGCCAAATAAAACAGTCAAGTTCTTCCCAAAGGCAAGGATTCGATTTACTTTCTGGAATTTTTCCTACGGTTAAAGCCATTCAAGCAGCCATCACTTTAGGTACTGGCTGTTCATTGGGTCCTGAAGGGCCTAGTGTAGATATTGGGAAATCATGTGCCAATGGATTCTATCTTATGATGGAAAACAACAGTGAAAAGATAAAAATAGCATTTGTTGCAGCTGGTGCAGCAGCTGGAATTGCTTCCGGCTTCAATGCAGCTGTTGCTGGTAGCTTCTTTGCAATCGAAACTGTATTAAGGCCTCTACGTGCAGAAAATTCGCCTCCTTTTACGACTGCGATGATCATATTGGCATCTGTTATTTCTTCTACAGTCTCGAATGTCTTACTTGGTGCACAGTCTGCTTTCACAGTACCTACTTATGATTTGAAATCTGCTGCTGAACTTCCATTGTATTTGATATTGGGAATGCTATGTGGCGTTGTGAGTGTAGCAGTTACACGTTTAGTTGCTTGGTTCGATAAATCATTTGAGTTCATCAAGGAAAGGTTTGGTCTTCCTCCTGTTGTCTGTCCTGCTTTAGGCGGTTTGGGAGCTGGAATAATAGCTCTCAAGTACCCAGGAATACTTTATTGGGGTTTTACAAACGTTGAAGAAATTCTTCATACTGGCAACCGTCCTTCAGCTCCTGGGATTTGGTTATTAACTCAGATAGCAGCTGCAAAAGTCGTAGCTACTTCTCTGTGCAAAGGTTCCGGGCTCGTAGGTGGCCTTTATGCACCAAGTCTAATGATTGGTGCGGCCGTCGGTGCTGTATTTGGGGGCTCAGCTGTTGAACTTATTAATATTGCAATTCCTGGAAATGCAGCTGTTGCACAGCCACAAGCATATGCACTCGTTGGAATGGCTGCTACGCTGGCCTCTGTCTGTTCCGTGCCCTTGACATCCGTTCTACTTCTATTTGAGCTGACAAAGGATTATAGGATACTCCTTCCTCTCATGGGGGCCGTAGGCTTGGCCATATGGGTTCCTTCTGTTACAAAACAGACCAAGGAAATTGAATCATCCGATAAGCAGGGTTTCGCTAGAGGTTATACGCCTCTTTCACCTTCTGAACGTAAAGATGGGGCGTCTTGGAGATATGATAATATTGACAATGGCTTGGAGCTCTCTGAGATAGCAAATCCATCTGACCATGAATCTACTTATGATGATAATCTTCTCGAAGACCTAAAGGTTTCTCAAGCGATGTCGAAGAACTATCTGAAGGTTTCATTTTCCATATATTTGAAAGATGCATTAAAATATATGAAAGATAACCAGCAGAACTGTGCATTAGTGGTCGACGATGATGATTTCCTCGAAGGGATCTTGACATATGGTGACATTAAACGATATTTCTTCAAGAAATATGGTGATGCTTTGAAGGGTGATTCCCTCAGTGTGGATACCGGCCTTGTGTCCTCTATTTACACTCGAGGGATTAGGTACCGTGGGCGAGAACGAGGGATTTTAACATGCCACCCTGACACTGATCTCGTAACTGCCAAGGAACTAATGGAGGCTAAGGGTATAAAGCAGTTGCCTGTTGTTAAGCGTAGTAAAGAAAGGAAGAAAAGAATCGTAGCTGTTCTCCACTATGATTCAATCTTTAGCTGTCTCAGAGAGGTCTTGAATCAAAGGGAAACTGTGAAGGTTGTCCAGGAGAGTGTTGCAGAGGGTCATTAA 2328 43.64 MEDHNEENHDLELQDGDELHPMRTNSGKRGGFLDLFHHLNRGGSFSGRRLNYKRLETENHSVNFNPSSVNIVGRNRTASSSSSSSSSSSSSSSDRHNNSHSLQTPTVTDGEIDDNIDDSAPPEWALLLIACLLGLATGLCVAAFNIGVHVIHEWAWAGTPNEGAAWLRLQRIADTWHRILLIPVTGGVIVGMMHGLLEILSQIKQSSSSQRQGFDLLSGIFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYLMMENNSEKIKIAFVAAGAAAGIASGFNAAVAGSFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGAQSAFTVPTYDLKSAAELPLYLILGMLCGVVSVAVTRLVAWFDKSFEFIKERFGLPPVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGNRPSAPGIWLLTQIAAAKVVATSLCKGSGLVGGLYAPSLMIGAAVGAVFGGSAVELINIAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQTKEIESSDKQGFARGYTPLSPSERKDGASWRYDNIDNGLELSEIANPSDHESTYDDNLLEDLKVSQAMSKNYLKVSFSIYLKDALKYMKDNQQNCALVVDDDDFLEGILTYGDIKRYFFKKYGDALKGDSLSVDTGLVSSIYTRGIRYRGRERGILTCHPDTDLVTAKELMEAKGIKQLPVVKRSKERKKRIVAVLHYDSIFSCLREVLNQRETVKVVQESVAEGH 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7894467 7901386 - Carg25230-RA Car16g00953 164105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00953 775 MobiDBLite consensus disorder prediction 1 24 - -
Car16g00953 775 MobiDBLite consensus disorder prediction 557 578 - -
Car16g00953 775 ProSiteProfiles CBS domain profile. 700 763 IPR000644 -
Car16g00953 775 MobiDBLite consensus disorder prediction 63 115 - -
Car16g00953 775 MobiDBLite consensus disorder prediction 1 26 - -
Car16g00953 775 Pfam Voltage gated chloride channel 203 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car16g00953 775 MobiDBLite consensus disorder prediction 63 110 - -
Car16g00953 775 ProSiteProfiles CBS domain profile. 617 675 IPR000644 -
Car16g00953 775 Pfam CBS domain 613 667 IPR000644 -
Car16g00953 775 Pfam CBS domain 703 752 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00953 - - - csv:101212254 1268.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00193 Car-Chr2:1156241 Car16g00953 Car-Chr16:7894467 1.85E-132 transposed
Car16g00953 Car-Chr16:7894467 Car06g00624 Car-Chr6:3646906 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00953 Car_Chr16 FPKM 0.332646 0.247438 0.178088 0.0 1.262563 1.173366 1.436202 0.230342 0.0 0.078845