Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00954 ATGTTATCCATTGAAAACCCTCCACCAGATCCCTCATATCAGCCATTGAGTATCAACAATGATGAGAGGCCTACTCAAAACGCCGCCATTCTTGACCACTCCTCCTTCCCTAACTTCTCCTTGAGAGATTATGTTTTCGGTTGTCGGAGCAAGGATATCGAAAACAACTGGCCATTTTCCCTCAAGAATTTGCAGATTTGTTTGAAACATGGTGTAAAGGATTTACTACCACCGTTTCAGTCTCAGAATCGTGTCCGAAACCAGCGGGGTGAAAGTTCAACATCAAGTGTTCTTCATGGGGAGTTCTCTGAGCCTAAAGAACCTGTAGAACTAGAGCGATCGGATGCTAAGTTCGGCGAAAAGCTAGTAAGAACTTGCACGGAATCGAGTTCATGCAGATGTGAAGGAGAAAATGGTTTCTCTTCCACCATGACAAGCATCTCACAACCCCAAAAAGAATTGGTTTCCACAAGTGGACCGTCTAGTTCATCTTTAAAAACCGATACTTTATCGGAAACCCCGGCCGAAGTGGAGCGTATTTGTTTTCCAGCATCTGAAAAGAACGAAAGTAAGATCAAAACCTCAGGTAAAAGATGCAAGATTATCAGAAAATCGACCAATCACGTTGACCAAACATCAACCGTAGATATTGCTGCGAGTCTTAGTACGGTATTGGAGTCGATGGCTTCGAAAATATGCCCTGTCTGCAAGACGTTCTCCTCTTCATCAAACACCACTTTAAATGCTCATATTGATCAGTGTCTTTCTATAGCATCAACTCCTAAGTGTACATCAGGCTCCAAACTCACACGGTTTAAGATCAAGCCGAGGAAGATGAAATTGATGGATGATATCTACGCTACAGCTCGTTCTTGCACGTTGGAAGAGCTTGACAGACGAAATGGTACCGCTTGGGCCACTTCGTCGGGCTTTCCTGCTGAGAATATCGAAAATTGTCAGATTAATGAAGGGAAAAAGCAGAAAGTGATGCCAGTTCATCCAGAGGACATTGATGATCATAGTGCAGGTGCAGTTTATATCGATGCCAATGGCACGAAACTTCGAATTTTGTCCAAGTTTAGTTCTCCGTCCTCGTTGTCGATATCACAAAATGAACTTGGTTCGAAGAAACTCAACGGAGCAACGGGAAGGAAGTTTCATTCAGCCAAAAAGAAGAAAGATCATTCAAATAAGCATCACAAGTATCTTAAAGTAGCTGCTGAAGGTAGAAAAGTTCCATCTCAACGGTGCATTTCTCAGCCTAGTATGGTCACTGAGTTTGCTTATCCTTTATTGACTGATAAGGTTCAAGGACACGCTGAACAGAATGGAAGTAGTAGATTGGAGGTACATAAAATAACGAAGCAAGCAAAACCCCACGATTCGGGAACTTTACGACAATGGGCGTGCTCAAAACGAACCAGAGCTAGTGTGAGCACCAGAAAGGAAGGCTATCAACCCTCTACGTTTAAATGGCATGTTGATACTGATCGCTCGGTTTTAGCTGACTCTTTGTTTGACAGAAGTCAAGTTGAGCATTGTGTTTCGTCTCCCGAAAGCAGCGAGAGAACGGACAACATGGAGTACGAAGCCTATATTTCAGACAAGAAACGGCGGTCTCCCGTGCGGAGGAGCCTGAGAAGTTCGTTTTCTGGTGAAATGGTTCATATTGGTTCTCCAACACAAATGAAATCTCAAACTCCACCTGGTTTTAACAAGAAGTTGTCAAGTAATTACCATGAAAATGCAGTGAAAGTTAGAAATTTGAACTCTTCCCGACGAGACGAGTTCCATGTCAGTAGCCGGTCGTCTACTGGTTCTAAGCCGTCCCCTCGGTTTAATCGGTTTTCTACTTTTGATCACAGCCGTAGCTCATCAGATGGAAGTATTGAAAGTGATCAATCTGCAAAGGAAGAGGTTACCAAAGTAAGTGAATTGAGAAACAGAAGTAATAGAGAAGCAATGAGCAAAGCCATAGCTTTGAGTAGTTCGAGTAGTTCGGACTCGGAACCCGAATACGACGGATGTCACGAGTTGAAAAACATGGATTCTCATATTCGAATGGATGTCGAGTTTCAAGAAAACATCAAGGGACTTGAACTTGGTAGTAAACAGAACTCATTTCATGAAGATGTTAGTGTGGATTCTTCTTCAAAATTAGCTCCGAACGAGAGCTTCACGTGTTTTTGTAAGACGAACAATAACGTCAAGACTCGGTGTGGCATGCTACAATCTACTCAGAATTGTTCATGCACCTTCTATGGATCATCAGATGGAGCGAAAGGCGGTTTCGGTATTGGACAAGACATGTTTTTCACTGATGAAGACTGCAGTGCCATGATTGGACATGATGTTCAAGGAGAATTGGATTCCGAGGCCAAGCGAGGAACGTCGTCTTTCGAGGTCGATCCAATATCTATTCCAGGACCTCCAGGATCTTTCTTGCCGAGCCCCCCGAGGGATATGAGATCCTCAGAATACCGAGGAACATCTTCGTTGAGCTATAGCTGGGTTCATTCCTGCCTCGATCAGCACGAGTTGATTGATGGGGATTCATCAGGTTCTCCTATTTCTGCAACATCAACTATCTCTAACACCACAGCATCTCGATCTTGTTTTAAGCATAACAATCCATCTCGAGTATCTTCCGATGTATTTCATGATAAGTTCGGGTCAGTATCTCCAAAACCTCGTGCATTGCCTCATGTAAATGGTGACATGTTTAAAGTCAATAAGTTACCAATTGAAACGGGAGCTCTTGGCGTTGTAAATAACGGGCAGCCTTGCTGTTGTCAAAGGGTCGGCATCAACGTAACTTATCCCGAACCACAACTGACGAGGCATCACGCGATGACTTCGGAAACCATGCCAGCCATGGACAGAAGACCGAACAGCTTTGATATTATGGCTGAAGGGCCTGGACAGACGGCACCAGAGAGCACGGGGTTCCCAGTAAATAAGTCGCCTTTCTATCCGGGACCGAAGTTTTCGAGTCCTCGTGAGCCTGCCAGTCCAGTTACGTCTAATTCTGTACTGAGGTTAATGGGAAAGAACTTGATGGTGGTAAACAAAGATGAGGAAGATGTAGGTATGTCAGTTAAGCAGCCACAACTTAGTCAGGTTCCAAGTTTTTCGGGCGGTTCCTCGCAACATGTTCGAAATCAAGCCTCCTCTGGTTTGTATCCTCATTGGCCACATCAAAATGCAGGTAACTTATTGGGGCAGAGTCTCGATGTAACGTCGTCGAGGGGCTTCGGGAGCCCTGCGAATCTGAATATGTCGTCACCACACGGTCAAGCACCGACCACATTGTTTCTTAAGCAGCACACAGCCTCCCAAGCCAGATTCATTGCCAATGATCCAAAACACCTTGTAAGTCCATTTTGTTATCAACCAAAGGATGCTTCAAATCTCAACAAACCAGCAACAATACACAGTTCTAGTTTTCAATCGACCCCGTCTCGAAAAGATCATGCCAGCCCCGTTAAATGGGATTGTAATTCCGAACCGCCATACGTCTGCAGGAGAGGAGTCTTTTAA 3540 44.38 MLSIENPPPDPSYQPLSINNDERPTQNAAILDHSSFPNFSLRDYVFGCRSKDIENNWPFSLKNLQICLKHGVKDLLPPFQSQNRVRNQRGESSTSSVLHGEFSEPKEPVELERSDAKFGEKLVRTCTESSSCRCEGENGFSSTMTSISQPQKELVSTSGPSSSSLKTDTLSETPAEVERICFPASEKNESKIKTSGKRCKIIRKSTNHVDQTSTVDIAASLSTVLESMASKICPVCKTFSSSSNTTLNAHIDQCLSIASTPKCTSGSKLTRFKIKPRKMKLMDDIYATARSCTLEELDRRNGTAWATSSGFPAENIENCQINEGKKQKVMPVHPEDIDDHSAGAVYIDANGTKLRILSKFSSPSSLSISQNELGSKKLNGATGRKFHSAKKKKDHSNKHHKYLKVAAEGRKVPSQRCISQPSMVTEFAYPLLTDKVQGHAEQNGSSRLEVHKITKQAKPHDSGTLRQWACSKRTRASVSTRKEGYQPSTFKWHVDTDRSVLADSLFDRSQVEHCVSSPESSERTDNMEYEAYISDKKRRSPVRRSLRSSFSGEMVHIGSPTQMKSQTPPGFNKKLSSNYHENAVKVRNLNSSRRDEFHVSSRSSTGSKPSPRFNRFSTFDHSRSSSDGSIESDQSAKEEVTKVSELRNRSNREAMSKAIALSSSSSSDSEPEYDGCHELKNMDSHIRMDVEFQENIKGLELGSKQNSFHEDVSVDSSSKLAPNESFTCFCKTNNNVKTRCGMLQSTQNCSCTFYGSSDGAKGGFGIGQDMFFTDEDCSAMIGHDVQGELDSEAKRGTSSFEVDPISIPGPPGSFLPSPPRDMRSSEYRGTSSLSYSWVHSCLDQHELIDGDSSGSPISATSTISNTTASRSCFKHNNPSRVSSDVFHDKFGSVSPKPRALPHVNGDMFKVNKLPIETGALGVVNNGQPCCCQRVGINVTYPEPQLTRHHAMTSETMPAMDRRPNSFDIMAEGPGQTAPESTGFPVNKSPFYPGPKFSSPREPASPVTSNSVLRLMGKNLMVVNKDEEDVGMSVKQPQLSQVPSFSGGSSQHVRNQASSGLYPHWPHQNAGNLLGQSLDVTSSRGFGSPANLNMSSPHGQAPTTLFLKQHTASQARFIANDPKHLVSPFCYQPKDASNLNKPATIHSSSFQSTPSRKDHASPVKWDCNSEPPYVCRRGVF 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7907891 7912347 + Carg25229-RA Car16g00954 164106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00954 1179 MobiDBLite consensus disorder prediction 552 586 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 800 826 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 378 399 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 1140 1162 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 632 651 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 1140 1157 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 81 100 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 143 171 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 602 631 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 81 111 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 1 21 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 1039 1101 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 383 399 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 536 651 - -
Car16g00954 1179 MobiDBLite consensus disorder prediction 587 601 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00954 - - - cmax:111500225 2158.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01403 Car-Chr6:10068659 Car16g00954 Car-Chr16:7907891 6.38E-08 transposed
Car16g00954 Car-Chr16:7907891 Car06g00625 Car-Chr6:3655588 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g790 . Blo03g01495 . . . Bpe08g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1275 Cone15ag1301 . . . . . . . . . . . . . . . . Cma16g00997 . Car16g00954 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006752 0 2 1 1 1 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00954 Car_Chr16 FPKM 6.542849 5.220984 4.889399 4.12026 9.553593 10.464881 9.509566 3.282051 3.765797 2.657992