Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00955 ATGGATTTTGAAAGCGAATCTTCGGCTCTTGAATCTGTGGAAGACAATGAAGTGAACCACGAAACTATTCCTTTTGATGATATCAACCGAACCAGAACCAATGGGAGTTGTGCTAATGATGCTGACCCGATGTTATCCATTTCACCGGCTTCGAAGGGAAATGAGTCAAGTGGAAAAGCTATGAATTCACAATCTCCTCCTCCCAACATTTCTTCTCCTGTAGCAAAAGGTTATGGATTGAAGAAATGGAAGCGTATCCCTAGAGATTTTGTGAAGGATATGAATTCTAGCGACGATACTAGTAAAATATTGAAGCGGGCACTGTCCACTTCTGGGAATCCGCTTAAACCTCAACATTCTCCGACCGGGAATAAGCAAAATAACGAAGGCTTAACCCCGTTGAGGAATATCGGAAATGTTGATAGCCAATTCCATGGTTCGAGTTCCAATTCGAGGTTTGCTGCGGGGTCTGCCTTTAACCATGGAACAGATTCGGAAAACAGCGAAGATCGGAGTAGCAAATCTTCCACTGCAGCGAGTGCTCCGAAGGCGAGGTATGATCTGAATACCGTCTTAGGACATGTGCGGGAAAAGAACAGGATAAAGAACGTGAGTGGGAAAAATCCAGGTGGTTCTGGTCAAAAGGGTCATCAGGGAAAGGGACGTGCTGAAGGAAGTAAAAAGGCGAGAGGAGAAAGAATCAAAGTCGAGAAGGAGAATTCTCAGTCTAGCATTGAATCTGACTCGAGGAGCTCGTGCTTTGTCTTTAGGCAGGGCATGATTGCTACTGCTAGCAATGGAAACCAAAATGAAAGGTCTGTTACCGACGATGGAGACAACAGCGATGGAGCTTACGCAGGTGATCAACAGTTTAGTGAAGAAGTTGAAACTGCATATAGGAAAGACGACGAGGTCGAAGCTGAAGATAATTTAGCTGCTGACTTGTCTTGGGAAGTTAAGGATGAAAAGGATAGGAATCATTGGTCACCTTTGAATAAGGATCCCATGGAAGAGTCTATTCTCAGCCTCCAGTCGGCTCAACACGCTCTCGAAAAAGAAATCAAGAAGCTAGGGGAGATAGGAAGGGACGAGATACCATCTTCCAGCCTAATCGACAATACCGAACCTTCAAGTTTTGGGTATGACAACCTAGAAGCACATAAATCAAGTTGTTCTTTCCAAATGGGCTCTGGGAAGGCTGTTTCGAGTTCCTTCGAAGCCACAGTTCTTGGCTTGACAGGAAAGGTTAAATTTCTGGAGAACAAGTTGGAAGAGACGATGGCCATACTCAAATCGAAGGAATCCCGAGTCGCTGAACTGGAATCCTCCATTAGCACCAGAAAATCACCCAAGGAGGAAGCAGTAAAGGATGAAAAAGTCAAGGAAATAGAGAAGGAATTTGAGAGGTTTTTTAAGCAAAGACTTGAAGCAGAAATTGAATATTTGGCAATAGTAAGAGCCATTGAGAATTTACAATGTGAAACATTAGTTGATGCTAAAAAAAAACTGGCTGATGAGCAAGCAGAGACGATGAACATATTTAGAGAAGCCGAAAGTAAAGCTACGATGCTTAAGAAACGAGCAGAGGGTTTGGAGAAATGCTGTGGTGATATCTTGGATACAAAGGAGGTCTCAACGACTCGAGGGGACGTATTCAAGGTTAGTTCGTGTGCGTTTCTGCAGTTGATACTCTTGAGCTTGGTTCTTTGGGTTTTTGTCTTGCAAATGTCTTCACCTGCTGGAGTAGTTGTACCAACATAA 1761 43.61 MDFESESSALESVEDNEVNHETIPFDDINRTRTNGSCANDADPMLSISPASKGNESSGKAMNSQSPPPNISSPVAKGYGLKKWKRIPRDFVKDMNSSDDTSKILKRALSTSGNPLKPQHSPTGNKQNNEGLTPLRNIGNVDSQFHGSSSNSRFAAGSAFNHGTDSENSEDRSSKSSTAASAPKARYDLNTVLGHVREKNRIKNVSGKNPGGSGQKGHQGKGRAEGSKKARGERIKVEKENSQSSIESDSRSSCFVFRQGMIATASNGNQNERSVTDDGDNSDGAYAGDQQFSEEVETAYRKDDEVEAEDNLAADLSWEVKDEKDRNHWSPLNKDPMEESILSLQSAQHALEKEIKKLGEIGRDEIPSSSLIDNTEPSSFGYDNLEAHKSSCSFQMGSGKAVSSSFEATVLGLTGKVKFLENKLEETMAILKSKESRVAELESSISTRKSPKEEAVKDEKVKEIEKEFERFFKQRLEAEIEYLAIVRAIENLQCETLVDAKKKLADEQAETMNIFREAESKATMLKKRAEGLEKCCGDILDTKEVSTTRGDVFKVSSCAFLQLILLSLVLWVFVLQMSSPAGVVVPT 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7920406 7923593 + Carg25228-RA Car16g00955 164107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00955 586 MobiDBLite consensus disorder prediction 101 163 - -
Car16g00955 586 MobiDBLite consensus disorder prediction 220 244 - -
Car16g00955 586 MobiDBLite consensus disorder prediction 13 27 - -
Car16g00955 586 Coils Coil 416 443 - -
Car16g00955 586 Coils Coil 460 480 - -
Car16g00955 586 MobiDBLite consensus disorder prediction 1 251 - -
Car16g00955 586 MobiDBLite consensus disorder prediction 82 100 - -
Car16g00955 586 MobiDBLite consensus disorder prediction 263 293 - -
Car16g00955 586 MobiDBLite consensus disorder prediction 49 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00955 - - - csv:101208338 855.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00955 Car-Chr16:7920406 Car06g00628 Car-Chr6:3672240 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g787 Blo03g00479 Blo03g01494 Bda07g00438 Bda09g00453 . Bpe08g01074 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1273 Cone15ag1299 . Csa03g00380 . . . . . . Bpe11g00614 . Bma07g01232 Bma14g00656 . . . . Cma16g00998 . Car16g00955 Cpe14g00821 . . . . . . . . . . . . . . . . . Chy06g01934 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004840 2 1 2 3 2 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00955 Car_Chr16 FPKM 28.404974 29.862661 20.422695 22.08687 14.200369 12.774003 13.58777 26.456099 24.331093 23.775148