Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00962 ATGGCCTCTACCTCCTCCAATAGACATGGCAACTACAAGGGAGTCCGCTGCCGGAGTGGCAAATGGGTGTCGGAGATTCGTGAGCCACGTAAGACTACTCGAATATGGCTCGGCACGTATCCAACGTCGGAGATGGCCGCTGCTGCCTACGACGTGGCTGCACTGGCTCTCAAGGGTAGCAATGCTGTTCTCAACTTCCCGGACTCGATTCGCTCCTACCCAATTCCGGCTTCCAAATCCCCAGCTGATATTCGTCTCGCTGCTGCCACTGCTGCCGCGACGAAAAAGGTTGATCAAGGAGAAAGTAATAACCCTATCTGCCACCAGTCTCCACCGTCCCATGAGTTCGTTGACGAAGAGGCACTGTTCGGAATGCCCAATTTGCTGCACGACATGGCGGAGGGAATGCTGTTGCCACCGCCACGAATGAGCGACTCGCCGTCATCACACGACTGCTACTCATGGAACTCCACCGGAGATGAAAATCTTTGGAGCTACCATTAG 504 54.76 MASTSSNRHGNYKGVRCRSGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNFPDSIRSYPIPASKSPADIRLAAATAAATKKVDQGESNNPICHQSPPSHEFVDEEALFGMPNLLHDMAEGMLLPPPRMSDSPSSHDCYSWNSTGDENLWSYH 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8019931 8020434 + Carg25221-RA Car16g00962 164114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00962 167 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
Car16g00962 167 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01243 Car-Chr2:8409741 Car16g00962 Car-Chr16:8019931 1.44E-51 dispersed
Car16g00962 Car-Chr16:8019931 Car18g01124 Car-Chr18:11208387 1.33E-45 dispersed
Car15g01085 Car-Chr15:8516066 Car16g00962 Car-Chr16:8019931 1.58E-30 wgd
Car16g00962 Car-Chr16:8019931 Car06g00633 Car-Chr6:3705144 2.77E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4983 PF00847 AP2 1.20E-11 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00962 - - csv:101202953 265.003