Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00965 ATGGGTTCTTGCCATTCGTCTCTAAAAGGGCGGCAGAGCAGAGGCGGCGCTGATTCTGCCGCGGCGGCGGAATCCCCAATAGCTTCTACAATCAACTCATTTTCTTCTGCTTCTTCGTTTTTGTACTCTAAGACCAGTAAGCCGCGTTGGTGGAAGAGCAATTCCACTAAAACTTTTGGCGTTGGGGTTTGTTCAGAGAAGGTTCATGAATTTGAGGTTCCGGGGCGGATTTGTTCAAATGGGTCATCGAGAATCGCTTGTTTGTATACGCAACAGGGGAAGAAAGGGGTTAATCAAGATGCCATGGTTGTGCATGAGGCTTTCGGTTCGAAAAGAGATACAATATTTTGTGGGGTATTTGATGGACATGGTCCTTTCGGACATATGGTTGCGAAAAAAGTTCGGGATACCCTTCCTCTAATCCTATGTACACAATGGACATCTAAATCAAACGAAGATCAAAGCAGTGTCGTTAAGACGAACCATTCCAGAAGTTCAAATTCTGAAAATTCTGTTGCTCTGGACGGCGATGAAGATTCTTACAAGTCACTGGAGGCCGAGGAAAACGAAAAATTCCCCAAGATGTTTCTGCCACTCAAAGTATCTTTACTGAAGTCCTTCAAATTAATGGATAAGGAGTTGAAACTGCATCCGAAAATTGATTGTTTTTGCAGTGGATCGACGGCTGTGACTCTAATAAAGCAGGGTCAGAACCTTATACTTGGAAATGTCGGTGACTCGAGAGCGGTGCTGGCTACAATAGACGACGATAACTCTTTGATTCCAGTTCAACTAACGGTGGACTTGAAACCCGACCTTCCTGCTGAAGCTGCTAGGATCCAGCAATGCAAAGGACGGGTCTTCGCTTTACAGGACGAGCCTGAAGTTGCACGAGTATGGTTGCCTAATAACGATTCACCTGGTTTGGCAATGGCGAGAGCTTTCGGAGACTTTTGTCTGAAGGATTTCGGTCTAATTTCTGTTCCCGACGTTTATTATCGTCACCTTACGGCGAGAGATCAGTTCGTAATTCTTGCCACTGATGGGGTTTGGGATGTTCTTTCGAATAAAGAAGCTATTGAAATTGTTGCTTCAGCCCCATCTCGCGAAACATCAGCCAGGGCTCTTGTCGACTGCGCCGTTCGTGCATGGAGGTTGAAATATCCTACATCCAAGAACGACGATTGTGCTGTTGTATGTCTCTTTCTCGAGTACGAGCCTGAAATAGAAGAAAACACAGCCACTAAACCAGTGGAAGAAGATCTAGCCCCGCCGAGCGAGGACACGAAAGATATTGAAGTCGATTCTAACGATCATGGCACGATTGGAAGCTCTAATGAGATTGTACCTGTCGACGACACAACAGACGAGAAGGTTGGAGGTGGTGGTCGAAACCCGTCGAAGAGAAGCTTAGCGGAGTGCATTTCGAATGAAGAGGAGGAATGGTCAGCATTGGAGGGTGTTACGAGAGTGAATAGTCTCCTAAGCCTTCCGAGGTTCCTGTCGGGTGACAAAAGGTCAGGCAGCTGGAGGAAGTGGCTATGA 1545 46.54 MGSCHSSLKGRQSRGGADSAAAAESPIASTINSFSSASSFLYSKTSKPRWWKSNSTKTFGVGVCSEKVHEFEVPGRICSNGSSRIACLYTQQGKKGVNQDAMVVHEAFGSKRDTIFCGVFDGHGPFGHMVAKKVRDTLPLILCTQWTSKSNEDQSSVVKTNHSRSSNSENSVALDGDEDSYKSLEAEENEKFPKMFLPLKVSLLKSFKLMDKELKLHPKIDCFCSGSTAVTLIKQGQNLILGNVGDSRAVLATIDDDNSLIPVQLTVDLKPDLPAEAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRHLTARDQFVILATDGVWDVLSNKEAIEIVASAPSRETSARALVDCAVRAWRLKYPTSKNDDCAVVCLFLEYEPEIEENTATKPVEEDLAPPSEDTKDIEVDSNDHGTIGSSNEIVPVDDTTDEKVGGGGRNPSKRSLAECISNEEEEWSALEGVTRVNSLLSLPRFLSGDKRSGSWRKWL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8036771 8043374 + Carg25218-RA Car16g00965 164117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00965 514 Gene3D - 78 405 IPR036457 -
Car16g00965 514 MobiDBLite consensus disorder prediction 154 174 - -
Car16g00965 514 ProSiteProfiles PPM-type phosphatase domain profile. 85 403 IPR001932 -
Car16g00965 514 MobiDBLite consensus disorder prediction 413 471 - -
Car16g00965 514 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 1 498 - -
Car16g00965 514 SUPERFAMILY PP2C-like 79 404 IPR036457 -
Car16g00965 514 MobiDBLite consensus disorder prediction 413 437 - -
Car16g00965 514 PANTHER ALPHABET, ISOFORM E-RELATED 1 498 - -
Car16g00965 514 CDD PP2Cc 84 403 IPR001932 -
Car16g00965 514 MobiDBLite consensus disorder prediction 1 21 - -
Car16g00965 514 Pfam Protein phosphatase 2C 190 380 IPR001932 -
Car16g00965 514 SMART PP2C_4 74 401 IPR001932 -
Car16g00965 514 MobiDBLite consensus disorder prediction 154 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00099 Car-Chr2:637029 Car16g00965 Car-Chr16:8036771 8.17E-145 dispersed
Car16g00965 Car-Chr16:8036771 Car17g00548 Car-Chr17:5108119 1.03E-144 dispersed
Car17g00316 Car-Chr17:1976767 Car16g00965 Car-Chr16:8036771 2.76E-113 dispersed
Car16g00965 Car-Chr16:8036771 Car05g00767 Car-Chr5:5959827 4.71E-164 transposed
Car16g00965 Car-Chr16:8036771 Car01g00441 Car-Chr1:2524632 7.35E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00965 - - cmo:103490977 887.871