Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00969 ATGGCATCTTCAAGGTCTCCGAATGGATCGTCTGACGATATCGTTGATACCTCCCCCTTGATGGGGAATTCGAATCGGTCGCTTGATGAAACGCATTCGGGTCGGCGATTTGTGCAGAGGCAAAGTCTGCGTCAGGCGGCGAGGTTTCTGAGGCAGGCGAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACAGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTCATCCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTGAGCCGCAACGAGTCTCCTACAATGCCTTTGAGGTTGTGGATTGTGGGGTATGCGTTTCAATGCGTTCTCCATATGGTGTGTGTTATTGTGGAGTATCGTCGCCGCCAGCAGCGGCGCTATTCAGACTTCAATTCGATGGATGAGGGAAATTCTGCACGCGGGCTTTCCGGTTTGGGGTCGAGAGGGAACTCGAGTCATTATGTATCATTGGCGCACCTGGATGATAACGACACCAGTGTAGCAAAGCACCTGGAATCTGCAAATACTATGTTTTCCTTCATCTGGTGGATCATTGGATTCTACTGGGTATCTGCAGGAGGCCAATCTTTAGCGCACGTCTCCCCTCTGCTTTACTGGTTATGCATCATATTCTTGGGTTTTGATGTCTTCTTTGTGGTCTTCTGTGTTGCTTTGGCATGTATCATTGGAATCGCTGTTTGCTGTTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAAGGAGCAACCAAAGAAGATGTTGAACAGTTGTCAAAGTTTACATTCAGAAAGGTTGATGATGCAGAGAAATTCTCCGCTGATGTACAGGAACCTCTTGGTGGCATAATGATCGAATGTAGTACAGATTCACCCATTGAACGTGCCCTCTCACAGGAGGATGCGGAGTGCTGCATCTGCCTTTCTGCATATGAGGATGGCGTTGAGCTACGAGAGCTTCCGTGTGGTCACCATTTCCACTGTGCCTGTGTCGATAAGTGGCTGTATATTAATGCTACCTGTCCTCTCTGCAAGTACAACATCCTGAAAAGTAGCAATCTTGCTCAAGAGGAAGTTTGA 1152 48.61 MASSRSPNGSSDDIVDTSPLMGNSNRSLDETHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPTMPLRLWIVGYAFQCVLHMVCVIVEYRRRQQRRYSDFNSMDEGNSARGLSGLGSRGNSSHYVSLAHLDDNDTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFTFRKVDDAEKFSADVQEPLGGIMIECSTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLAQEEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8084760 8091807 - Carg25214-RA Car16g00969 164121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00969 383 MobiDBLite consensus disorder prediction 1 35 - -
Car16g00969 383 CDD RING-H2_RNF111_like 327 371 - -
Car16g00969 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 382 IPR013083 -
Car16g00969 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Car16g00969 383 SMART ring_2 328 368 IPR001841 -
Car16g00969 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 383 - -
Car16g00969 383 MobiDBLite consensus disorder prediction 1 28 - -
Car16g00969 383 Pfam Ring finger domain 327 369 IPR001841 -
Car16g00969 383 PANTHER TARGET OF ERK KINASE MPK-1 6 383 - -
Car16g00969 383 SUPERFAMILY RING/U-box 318 375 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car09g00929 Car16g00969 CCT
Car01g00937 Car16g00969 CCT
Car06g00939 Car16g00969 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00939 Car-Chr6:7258309 Car16g00969 Car-Chr16:8084760 3.24E-138 dispersed
Car14g01816 Car-Chr14:14162160 Car16g00969 Car-Chr16:8084760 2.37E-142 dispersed
Car16g00969 Car-Chr16:8084760 Car17g00511 Car-Chr17:4616280 2.50E-36 dispersed
Car16g00969 Car-Chr16:8084760 Car06g00644 Car-Chr6:3862694 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00969 - - csv:101209228 685.641