Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00970 ATGGCGTCTTCTTCAGGAAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTCGCTGACATTGTAGGCAACGAAGAAGCAGTTTCTCGGCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATTTCATATTATCTGGGGCAAGTGAAATTCAAAAGGTTCTAATCATGTGGAATGAGGGTCCGCCTGGAACTGGGAAGACAACCAGTATTCTGGCTCTTGCTCACGAGCTTTTGGGACCAAATTACAAGGATGGTGTTCTGGAGCTTAATGCATCAGATGAAAGGGGAATCGACGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGACGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCGAACACAACACGTTTTGCACTTGCATGTAATACCTCCTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTACTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACCGCTGATGGTGATATGAGGCAAGCGCTGAATAATTTGCAAGCAACATATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCCCTGCATGTTAAGAACATGGTGCGTAACGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGCTCTGAAGCAACTCTACGACATGGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATTATTAAGAACTATGATATGGCTGAGTATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGGTCTTATCTGCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATTGTTCGTGAGACTGCGAAAGCGCCATGA 1041 44.67 MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGASEIQKVLIMWNEGPPGTGKTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8093396 8099581 + Carg25213-RA Car16g00970 164122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00970 346 Pfam Replication factor C C-terminal domain 250 335 IPR013748 -
Car16g00970 346 SMART AAA_5 57 192 IPR003593 -
Car16g00970 346 Pfam ATPase family associated with various cellular activities (AAA) 68 182 IPR003959 GO:0005524|GO:0016887
Car16g00970 346 CDD AAA 29 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01140 Car-Chr4:6565584 Car16g00970 Car-Chr16:8093396 7.50E-10 dispersed
Car04g02301 Car-Chr4:18466410 Car16g00970 Car-Chr16:8093396 1.51E-58 dispersed
Car16g00784 Car-Chr16:5021555 Car16g00970 Car-Chr16:8093396 1.71E-08 dispersed
Car16g00970 Car-Chr16:8093396 Car15g00613 Car-Chr15:3395071 7.19E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00970 K10755 - csv:101208984 615.92