Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00981 ATGACATATTGTGAGACGGATAACGGCCGGAGAGGGGAAGTGGTGGCGGAGGATATAACGGTGGGAATTGGATGTGATGATGGTAATGGAGACTATGTTAGGTTGGGACAGAACCCTTGTAACTGTGAAGCTGAGGTCTCGTCTGATGGGGGTGCTTCTCAGCAGCCTTGTTCTCCAGGAAGGTCCTTGTGGCTTTGGTTTCGTTTGGTGGTGTTGTTCATCTTCTTGGTGTCATTAGCTGTTGTTTTTTTCAAATGGGTTGGACCATTCTTCATGAATAAGGAAATAATACCGATTATAAACTGGGAAGCTGAAACGTTTAGTACTCCGGTGCTGGCAGTTCTCGTTTTCGCCTCGGTTGCACTGTTCCCTTCATTGTTTTTGCCATCTTCACCTTCTATGTGGCTGGCAGGGATGACATTTGGTTATGGTTTTGGGTTCCTGTTAATTATATCAGCAGTAACTATTGGTGTATCACTTCCATATTTCATTGGCTCCCTATTCTATCGTAAAATTCAAGGATGGTTAGAAAAATATCCTAAGAGAGCTTCAGTTTTAAGATTAGCAGGCGAAGGAGACTGGATTCATCAGTTTCGCGCGGTAGCACTAATTCGAATTTCACCGTTTCCTTACATAGTATATAATTACTGTGCTGTAGCAACAAATGTCAGATATGGTCCGTACATCTTGGGGTCGCTGATTGGAATGGTGCCAGAAATATTTGTTACAATATACACTGGCATTTTAATCAGGACATTGGCAGATGCTTCACAAAATCAGCAGTTCCTCTCGGCCCCCCAGATCGCGTTCACCATCGTTGGATTCTGCGTTACTGCAGCCACGACGGTTTTCTTCACTGTATATGCAAAAAGGAAACTAAACGAATTGCAGACAGAAGACGAACAATTATTGCAGTAG 918 43.46 MTYCETDNGRRGEVVAEDITVGIGCDDGNGDYVRLGQNPCNCEAEVSSDGGASQQPCSPGRSLWLWFRLVVLFIFLVSLAVVFFKWVGPFFMNKEIIPIINWEAETFSTPVLAVLVFASVALFPSLFLPSSPSMWLAGMTFGYGFGFLLIISAVTIGVSLPYFIGSLFYRKIQGWLEKYPKRASVLRLAGEGDWIHQFRAVALIRISPFPYIVYNYCAVATNVRYGPYILGSLIGMVPEIFVTIYTGILIRTLADASQNQQFLSAPQIAFTIVGFCVTAATTVFFTVYAKRKLNELQTEDEQLLQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8328889 8330971 - Carg25289-RA Car16g00981 164133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00981 305 PANTHER SNARE ASSOCIATED GOLGI PROTEIN FAMILY 15 304 - -
Car16g00981 305 Pfam SNARE associated Golgi protein 128 248 IPR032816 -
Car16g00981 305 PANTHER EXPRESSED PROTEIN 15 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00981 - - - bhj:120069233 536.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00809 Car-Chr4:4710973 Car16g00981 Car-Chr16:8328889 9.38E-88 dispersed
Car16g00779 Car-Chr16:4972543 Car16g00981 Car-Chr16:8328889 1.73E-83 dispersed
Car16g00981 Car-Chr16:8328889 Car17g00246 Car-Chr17:1507129 4.35E-06 dispersed
Car16g00981 Car-Chr16:8328889 Car06g00655 Car-Chr6:3919122 2.44E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g454 Blo02g01072 . Bda06g00059 . Bpe05g00611 . . . . Cmo16g01076 . . . . . Cpe14g00850 . . . . . . . . Cla10g00312 Cam10g0327 Cec10g0339 Cco10g0332 Clacu10g0323 Cmu10g1163 Cre10g0573 Cone8ag0349 Cone12ag0343 Cone6ag0723 Cone9ag0729 Lsi07g01361 . . Cme06g02646 . . . . . . . Bma12g00117 . . . . Cma16g01030 . Car16g00981 . . . . . . . . . . . . . . . . . Csa03g00335 Chy06g01990 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006552 1 0 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00981 Car_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0