Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car16g00986 | ATGGAGGGAGGAGAAGGGGATGCCGGAAATGGGGCTACTGCAGCTGCAGGATCAAGTCCTCCGAGACCTGAGATGGCAGCTCCGGCACCGGAAGGTGGCGGTCCGGTGAGTTCTGCGGCGGCGGTGGCGGGGAAGAAGAAGAGGGGAAGACCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGCGGCGGCGCTGTCGCCGAAGCCGATATCGACGTCGGCACCTGCACGGTCGGCGGTGATTGATTTCTCGGCGGAGAAACGTGGGAAAGTGCGGCCGGCGAGTTCGTTGAGCAAAACCAAATATGAAACGGAGAATTTAGGTGAATGGGTACCTTGTTCAGTAGGAGCTAATTTCACACCCCATATCATCACTGTCAACACTGGTGAGGACGTTACGATGAAGGTTCTCTCATTTTCTCAACAAGGACCTCGAGCCATTTGTATTCTCTCTGCTAACGGTGTGATTTCGAGCGTCACTCTTCGTCAACCCGATTCTTCTGGAGGAACATTAACATATGAGGGTCGTTTTGAGATACTGTCGTTGTCGGGATCGTTCATGCCGAGCGATAATGCGGGAACAAAGAGTAGAACTGGTGGAATGAGTGTCTCGTTAGCGAGTCCAGACGGACGCATTGTTGGTGGCGGAGTTGTTGGTTTGTTAGTAGCTGCAAGTCCGGTTCAAGTGGTAGTAGGAAGCTTTATATTTGGGAACCAACACGAGCAAAAGCCGAAGAAGCCGAAACAAGATGTTATATTACCGGTTTCCGTTTTTCCAATTTCGAGTGTTGAACCGAAATCATACATGACAACAACGACAACGACGACGACAACATCTTCCCTTCGTGCTGAAACGTGGTCACCTTTAGTTCCAGATTTGAAGAGTCAACCAACTGATATCAATGTACCGATAACTAGTGGTTAA | 924 | 50.65 | MEGGEGDAGNGATAAAGSSPPRPEMAAPAPEGGGPVSSAAAVAGKKKRGRPRKYGPDGKLNAAALSPKPISTSAPARSAVIDFSAEKRGKVRPASSLSKTKYETENLGEWVPCSVGANFTPHIITVNTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNAGTKSRTGGMSVSLASPDGRIVGGGVVGLLVAASPVQVVVGSFIFGNQHEQKPKKPKQDVILPVSVFPISSVEPKSYMTTTTTTTTTSSLRAETWSPLVPDLKSQPTDINVPITSG | 307 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 8368895 | 8370987 | + | Carg25284-RA | Car16g00986 | 164138 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car16g00986 | 307 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 118 | 238 | - | - | |
| Car16g00986 | 307 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 121 | 234 | IPR005175 | - | |
| Car16g00986 | 307 | ProSiteProfiles | PPC domain profile profile. | 116 | 261 | IPR005175 | - | |
| Car16g00986 | 307 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 31 | 304 | IPR039605 | GO:0003680 | |
| Car16g00986 | 307 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 | 31 | 304 | - | - | |
| Car16g00986 | 307 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
| Car16g00986 | 307 | Gene3D | - | 121 | 249 | - | - | |
| Car16g00986 | 307 | CDD | DUF296 | 120 | 234 | IPR005175 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car15g01061 | Car16g00986 | CCT | |
| Car15g01061 | Car16g00986 | ECH | |
| Car06g00971 | Car16g00986 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car06g00971 | Car-Chr6:7448183 | Car16g00986 | Car-Chr16:8368895 | 1.14E-87 | dispersed | |
| Car14g01784 | Car-Chr14:13966301 | Car16g00986 | Car-Chr16:8368895 | 1.18E-87 | dispersed | |
| Car16g00986 | Car-Chr16:8368895 | Car18g01102 | Car-Chr18:11045895 | 2.92E-76 | dispersed | |
| Car15g01061 | Car-Chr15:8352036 | Car16g00986 | Car-Chr16:8368895 | 8.31E-125 | wgd | |
| Car16g00986 | Car-Chr16:8368895 | Car02g01272 | Car-Chr2:8526097 | 8.24E-129 | wgd | |
| Car16g00986 | Car-Chr16:8368895 | Car06g00668 | Car-Chr6:3979908 | 8.69E-152 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car16g00986 | - | - | csv:101205374 | 442.965 |