Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00998 ATGATAGCGTTCATTAGATTTCGGAATTTATCGTTCCATTTCCGTAAGGAAACTGAATTAATTAGACGTTTTCATTCCGGAACGAATCTGAAATCCACTTCTCCGGATTCTTCCTGCTCTGCCGTTGCGATTTTCTGGGATTTGGACAATAAACCACCGAAATCGTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAGGCTGCAGCGGCTTCCTTTGGCGCCGTTCGGTACATGGTGGCTTATGCGAATCGGCATGCGTTCAGCTATGTGCCGCAAGTTGTTAGAGAGAAGAGGAGAGAGAGGAAGATGCTTAATCAATTGGAGAGGAAAGGTGTGATTAAATCGATTGAGCCGTATCTGTGTCGTGTTTGTGGGAGAAATTTCTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATCGAATCTGCCAAGGGTAGTAGAAGAGTGAAGTTGCTCGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGACTCCGAAAGAGGGATATGGTCTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCCGATGTAGAATTGAGAAACGACATGGTTGAGGTCATGGATAGGAGAAGAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGAATGTTTTGAAGGAGGCCAAGTTGAGATGTCTTAGAACAGTTGTTGTTGGGGATCTTAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAGAAGGAGGCTGTGTCTGTTGTGGGAAAATGGAAGGATCGGGACGTTTTGAAGAGATTGGAATGGACATACAATCCTCAATTGGAGAAGGAAGTGTTTGGTTTGGATGATGATATGGGCGAGGATGAAGATGTTGAACAAGGTTCGGTTGATGAGAATATGACAAATGGTGACAGTGGTGCTTGGTGGGATCTCCGCTCTGATGCTGAAACTGAAGCTGTGTCGTCACGATCATGTAAATGA 1095 43.38 MIAFIRFRNLSFHFRKETELIRRFHSGTNLKSTSPDSSCSAVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGAVRYMVAYANRHAFSYVPQVVREKRRERKMLNQLERKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKEGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEVMDRRRAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKEVFGLDDDMGEDEDVEQGSVDENMTNGDSGAWWDLRSDAETEAVSSRSCK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8444016 8445110 + Carg25272-RA Car16g00998 164150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00998 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 147 IPR013087 -
Car16g00998 364 MobiDBLite consensus disorder prediction 322 349 - -
Car16g00998 364 Pfam NYN domain 190 271 IPR021139 GO:0004540
Car16g00998 364 ProSitePatterns Zinc finger C2H2 type domain signature. 121 142 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00206 Car-Chr9:1028662 Car16g00998 Car-Chr16:8444016 5.93E-71 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4985 PF01936 NYN 1.10E-09 CL0280 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00998 - - cmax:111465052 721.079