Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01026 ATGGGATCAAAGCATAATTTTCCCGGGAACAAAAACCGAGGTCCGATATCTCTATTTGCTGTGATTGGTTTATGCCTTTTCTTTTACATTTTGGGAGCATGGCAGAGAAGTGGATTTGGGAAAGGAGATAGCATAGCAATGGAAATTACGAGGCTATCAAATTGCAACGTTGTTAAAGACTTGAACTTCGAGACTCATCACAGTATCGAGATTATCGAATCTTCTGAACCAAAAAAAAAGGTGTTCAAACCATGTGACATAAAGTACAAAGATTATACACCTTGCCAGGAACAAGACCGAGCTATGAGATTCCCTAGGGAAAATATGATATACAGGGAAAGGCATTGCCCTCCAGTAGATGAAAAGTTGCACTGCCTCATTCCAGCTCCCAAAGGTTATATGACTCCATTTCCGTGGCCTAAAGGCCGTGATTATGTTCATTACGCCAATGTTCCATATAAGAGCCTGACAGTTGAGAAGGCAAATCAGCATTGGGTAGAGTTTCAGGGCAATGTATTTAAATTTCCTGGTGGTGGGACGATGTTTCCTCAAGGAGCCGATGCATATATCGATGAACTAGCATCAGTTATTCCAATTGCAGATGGTTCCATTAGAACAGCTCTGGATACTGGTTGTGGGGTTGCTAGCTGGGGTGCATATTTGTTCAAGAGAAATGTATTGGCCATGTCGTTTGCACCAAGAGACAATCACGAAGCACAGATACAGTTTGCACTGGAGCGTGGTGTACCTGCTATTATTGGCGTGTTGGGTAGTATACGCCTTCCATATCCATCTAGAGCCTTCGATATGGCGCAGTGTTCAAGATGCCTTATACCATGGACTGCAAATGATGGTATGTATCTGATGGAAGTCGACAGAGTCCTCAGACCTGGTGGCTATTGGATCCTATCTGGCCCTCCAATCAACTGGAAGACCTATTATCAGACATGGAAGCGTTCTAAAAAGGATCTAAATGCAGAGCAGAAGAAAATCGAAGAGTTAGCCGAGCAGCTTTGCTGGGAGAAAAAATACGAGAAGGGAGATATTGCGATCTGGAGGAAAAAGGACAATGACAAATCCTGCAAAAGGAAGAAGACTGCAAAAATATGTGAAGCAAATGATGTAGAAGATGTCTGGTACCAGAAAATGGAAACATGCATCACCCCTTTTCCTGAGGTAACAAGTGATGGAGAAGTAGCAGGAGGGAAATTGAAAAAGTTCCCAGCAAGGCTTTTTGCTGTACCTCCCCGAATATCGAACGGTCTAATTCCAGAGGTTACAGCTGAATCTTTTGAAGAGGACAACAAAATTTGGCGAAAGCATGTTAATGTTTACAAGAAGATAAATAAATTGATTGGCAGCCCAAGATATAGGAATGTGATGGATATGAATGCAAACCTCGGGGGATTTGCAGCTGCGGTTCACTCGAAAAATGCTTGGGTGATGAATGTTGTGCCTACAATTGCCAAGAACACTCTCGGAGCCATTTACGAGAGAGGTCTTGTTGGCATGTATCATGATTGGTGTGAGGGCTTCTCTACTTACCCGAGGACGTATGACTTCATTCATGGGAATGATGTATTCAACCTGTATGAGAACACGTGCAATCTCGAGGACATTCTTTTAGAGATGGACCGTATTTTGAGGCCAGAGGGAATCGTCATCCTCCGAGATGGGGTCGATGTCCTGAATAAGGTGAAGAAAATAGCTGCCGGTATGAGATGGGATGTGAAATTGATGGATCACGAGGATGGGCCTCTTGTGCCAGAGAAGATAATGGTTGCTGTTAAACAGTACTGGGTTGTAAGCAGCCCACACAACAGCACTTCCAGTGATGAATAA 1842 43.43 MGSKHNFPGNKNRGPISLFAVIGLCLFFYILGAWQRSGFGKGDSIAMEITRLSNCNVVKDLNFETHHSIEIIESSEPKKKVFKPCDIKYKDYTPCQEQDRAMRFPRENMIYRERHCPPVDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPYKSLTVEKANQHWVEFQGNVFKFPGGGTMFPQGADAYIDELASVIPIADGSIRTALDTGCGVASWGAYLFKRNVLAMSFAPRDNHEAQIQFALERGVPAIIGVLGSIRLPYPSRAFDMAQCSRCLIPWTANDGMYLMEVDRVLRPGGYWILSGPPINWKTYYQTWKRSKKDLNAEQKKIEELAEQLCWEKKYEKGDIAIWRKKDNDKSCKRKKTAKICEANDVEDVWYQKMETCITPFPEVTSDGEVAGGKLKKFPARLFAVPPRISNGLIPEVTAESFEEDNKIWRKHVNVYKKINKLIGSPRYRNVMDMNANLGGFAAAVHSKNAWVMNVVPTIAKNTLGAIYERGLVGMYHDWCEGFSTYPRTYDFIHGNDVFNLYENTCNLEDILLEMDRILRPEGIVILRDGVDVLNKVKKIAAGMRWDVKLMDHEDGPLVPEKIMVAVKQYWVVSSPHNSTSSDE 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8801955 8807613 - Carg23230-RA Car16g01026 164178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01026 613 Coils Coil 314 337 - -
Car16g01026 613 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 91 597 IPR004159 GO:0008168
Car16g01026 613 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 4 605 IPR004159 GO:0008168
Car16g01026 613 PANTHER METHYLTRANSFERASE PMT14-RELATED 4 605 - -
Car16g01026 613 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 322 IPR029063 -
Car16g01026 613 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 442 589 IPR029063 -
Car16g01026 613 Gene3D Vaccinia Virus protein VP39 154 385 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01026 - - - csv:101214832 1196.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00124 Car-Chr16:724428 Car16g01026 Car-Chr16:8801955 0 dispersed
Car16g01026 Car-Chr16:8801955 Car18g01135 Car-Chr18:11299190 0 dispersed
Car01g00427 Car-Chr1:2456175 Car16g01026 Car-Chr16:8801955 0 transposed
Car05g00779 Car-Chr5:6107566 Car16g01026 Car-Chr16:8801955 0 transposed
Car16g01026 Car-Chr16:8801955 Car05g01015 Car-Chr5:9681010 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g608 . Blo03g00109 . . . Bpe07g00228 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0602 . . . . . . . . . . . . Bma05g00394 Bma12g00228 . . . . . . Car16g01026 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005581 1 2 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01026 Car_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0