Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01029 ATGAATTGGGACTTGAGTCAGTGGTGCCCTCTAATCGATGATAGGTGCTTTTTGCAGTGGCTGGTTAAGATTCCTTCTGAGCAAGAGCAGTTGAGGGCACGGCAAATTAGTGCCCAACAAATAAATAAAATTGAGGAACTTTGGAAGACAAACCCAGATGCATCTCTTGAAGATCTTGAAAAACCTGGTGTGGATGATGAACCACAGCCCGTAGCATTAAAATATGAAGATGCTTATCAGTATCAAAATGTATTTGCACCTCTTATCAAGCTTGAAGCCGACTACGATAAAATGATGAAAGAATCTCAAAGCAAGGATAATGTGACTGTACGTTGGGACATTGGTCTTAACAAGAAGAGAATAGCTTATTTTGTCTTCCCAAAGGAGGACAATGAGTTGCGTCTTGTACCCGGAGATGAGTTGAGGTTACGCTATTCTGGTGATGCAGCTCATCCAGCTTGGCATTCTGTTGGACATGTGATCAAGTTAACTGCACAGGAAGAGGTTGCACTCGAGCTACGTGCTAGCCAGGGGGTTCCAGTTGATGTGGTCCATGGTTTTAGTGTTGATTTTGTGTGGAAGAGTACTAGTTTCGACCGAATGCAGGGAGCTATGAAGACATTTGCTGTTGATGAGACCAGTGTTAGTGGTTATATCTACCATCACTTATTAGGACACGAAGTGGAGGTTCAGATGGTTCGCAATACACTTCCACGTCGTTTTGGTGCTCCTGGTCTCCCAGAACTCAATGCATCTCAAGTTTTTGCTGTAAAAAGTGTTCTTCAGAAGCCAATAAGCTTGATTCAGGGCCCCCCGGGTACTGGGAAAACTGTAACTTCTGCTGCCATAGTGTATCATATGGCCAAACAAGGCCAAGGGCAGGTGCTGGTCTGTGCCCCTAGTAATGTGGCTGTGGACCAACTGGCAGAGAAGATAAGTGCAACTGGGTTAAAGGTTGTTAGGCTATGTGCAAAATCAAGAGAAGCTGTAAGTTCTCCTGTGGAACACTTGACCCTTCACTATCAGGTTCGACATCTTGACACATCGGAAAGAAGTGAACTTCATAAGTTGCAACAATTGAAAGATGAACAAGGGGAGCTGTCTAGCAGTGATGAGAAAAAATATAAAGCCCTTAAGAGAGCAACAGAGAGGGAAATTTCCCAGAGTGCAGATGTTATTTGTTGCACATGTGTCGGTGCTGGAGATCCTCGCCTGTCAAATTTTAGATTTCGCCAGGTTCTTATCGATGAGTCTACTCAGGCAACAGAACCTGAATGTCTTATTCCTCTTGTTCTTGGAGCAAAGCAGGCATGTCGAGCTGTTCTTGTTGGTGACCATTGCCAACTGGGACCTGTCATTATGTGCAAAAAAGCAGCACGTGCAGGGCTGGCTCAATCCCTTTTTGAACGTCTTGTTCTTCTTGGTGTGAAGCCAATTAGATTGCAGGTCCAATATCGTATGCACCCATCCCTTTCTGAATTTCCTTCCAACAGCTTCTATGAGGGCACACTACAAAATGGAGTTACAATCAATGAAAGGCAATCGACAGGCATCGACTTTCCATGGCCAGTTCCCAACCGTCCAATGTTCTTCTATGTTCAGATGGGACAAGAGGAGATAAGTGCCAGTGGAACTTCCTACCTAAATAGGACCGAGGCAGCAAATGTAGAAAAAATTGTGACCACTTTCTTAAGAAGTGGTGTAGTCCCTAGTCAGATTGGAGTTATTACACCATATGAGGGTCAACGAGCTTACATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGACAGCAACTTTACAAGGAAATTGAGGTTGCAAGTGTGGATTCATTTCAAGGAAGGGAAAAAGATTACATCATATTGTCATGCGTAAGGAGTAACGAACATCAGGGCATTGGATTCCTTAACGATCCTCGCAGGCTCAATGTGGCTTTAACACGAGCTCGATATGGTATTGTCATTCTTGGAAACCCAAAGGTTTTGAGTAAACAACCTCTGTGGAATAGCTTGTTGACACATTACAAGGAACATGAATGCTTGGTTGAGGGTCCTTTGAATAACTTGAAACAAAGCATGATTCAGTTTCAGAAGCCTAAAAAGATATACAATGATCGGCGTCTTTTCTTTGCTGGTGGGCCTGGAGTTGTCCCCAATGATAATTTTGGGCCTGTTGCCCCATCTGGTCCCAATGCTGATAGAAGAAGTAGTCGTGGTAGAGGTTCGTACTTTCCTCCTCACCTGCCGAATGGTGCGCAAAAGCCTGGAGTGCATGCATCTGGTTATCCCATGCCACGAGTTCCTCTTCCCTCGTTTCATGGTGGTCCCCCGCATCCATATGGAATTCCAACTCGTGGAGCTGTACATGGACCAGTTGGTGCTGTTCCTCATGTTCCTCAACCAGGAAGTAGAGGTTTTGGGGCAGGGCGGGGAAATGTTGGTGCTCCTATTGGTAGTCAGCTTCCAAATCAACAAGGCTCTCAACAAAATATTGGAAATCTTGGCTCCACTTTTAACTTTCCTGGTTTGGAGAGTCCCAATAGCCAACCATCAGTGGGTGGTCCGTTGTCGCAGCTTGGGTTTGTTAACAATATGCCTGTTCAGCCGCCTACTCAAACATTTCGTGATGGATACTCCATGGGAGGAATTTCTCAGGACTTCTTGGGCGATGACTTTAAAAGCCAGGGATCACATGTTCCATACAATGTTACTGATTTCTCCACTCAGGCCTCTCAAACTGGATATCCCATTGATTATGTTAGTCAAGGAGCACAGGGTGGCTTTCCAGGGAGCTTCCTGAACCAGAATTCTCAATCGGGATATAACCGTTTTGGAACAGGAAATGATTTCATGTCGCAGGACTACATGAACCATGGTTCACAAGGTTTATTTACTCAAGTTGGTTTCAGCGATCCCTCACTAGATGAAGCCTCCCAAAGTCACTATAACGTGACAAATACAAACTCACTACAGTCTCAGGGCATGATGAATTCTCTCTACTCCCAGCCCTTTGCACATTACAATACACAGCCTTCGACCCAGCAGGCCCCACCACAGCAGCAGCAGCCTCAGCAGGGCCAAAGCTCTCAAAATCAGAAAATTCACTTTAGTGGTTGA 3117 44.95 MNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDVVHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQACRAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNFGPVAPSGPNADRRSSRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPLPSFHGGPPHPYGIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGNVGAPIGSQLPNQQGSQQNIGNLGSTFNFPGLESPNSQPSVGGPLSQLGFVNNMPVQPPTQTFRDGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQASQTGYPIDYVSQGAQGGFPGSFLNQNSQSGYNRFGTGNDFMSQDYMNHGSQGLFTQVGFSDPSLDEASQSHYNVTNTNSLQSQGMMNSLYSQPFAHYNTQPSTQQAPPQQQQPQQGQSSQNQKIHFSG 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8821283 8831874 + Carg23233-RA Car16g01029 164181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01029 1038 MobiDBLite consensus disorder prediction 720 761 - -
Car16g01029 1038 Pfam Type III restriction enzyme, res subunit 252 316 IPR006935 GO:0003677|GO:0005524|GO:0016787
Car16g01029 1038 Pfam RNA helicase UPF1, 1B domain 103 192 IPR040812 -
Car16g01029 1038 MobiDBLite consensus disorder prediction 824 852 - -
Car16g01029 1038 Pfam AAA domain 464 659 IPR041679 -
Car16g01029 1038 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 257 389 IPR014001 -
Car16g01029 1038 MobiDBLite consensus disorder prediction 1003 1038 - -
Car16g01029 1038 Pfam AAA domain 350 454 IPR041677 GO:0004386
Car16g01029 1038 Pfam RNA helicase (UPF2 interacting domain) 1 51 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01029 K14326 UPF1, RENT1; regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3] - csv:101214107 2026.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00775 Car-Chr2:5643824 Car16g01029 Car-Chr16:8821283 7.36E-60 dispersed
Car04g01426 Car-Chr4:8260327 Car16g01029 Car-Chr16:8821283 6.37E-28 dispersed
Car09g00579 Car-Chr9:3275167 Car16g01029 Car-Chr16:8821283 5.94E-43 dispersed
Car14g00411 Car-Chr14:2092348 Car16g01029 Car-Chr16:8821283 1.38E-57 dispersed
Car16g01029 Car-Chr16:8821283 Car17g00586 Car-Chr17:5596943 5.69E-43 dispersed
Car18g00803 Car-Chr18:9107926 Car16g01029 Car-Chr16:8821283 1.28E-27 dispersed
Car14g01742 Car-Chr14:13726154 Car16g01029 Car-Chr16:8821283 2.18E-22 transposed
Car08g01018 Car-Chr8:6956339 Car16g01029 Car-Chr16:8821283 6.12E-45 transposed
Car16g01029 Car-Chr16:8821283 Car05g01012 Car-Chr5:9642672 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01029 Car_Chr16 FPKM 2.105631 1.859512 0.0 0.0 5.926081 4.367419 7.358751 0.0 0.0 0.0