Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01030 ATGGGCGTTAGAGAATTCCAAATCAGTGATACAAACGTTGTAATCCATGAGCTTGACGACCTCTATGATTCCACAACTGGTAGAGTGCTCACCGGTTCCTGGGTCTGGAACTCAGCCTTCGTCCTAGCCGAATGGATGGCAACTCGGTGCAAGTTATTCGACTTCGACTTCCGGGACAAGACCGTGATTGAGCTCGGAGCTGGGGCTGGCCTCCCTGGTTTGATGGCAGCTTTACTTGGTGCTCGTCGTGTTGTACTTACTGATGTAGAACCATTGCTTCCTGGGTTGTTGAGGAATGTAGATGCCAATGGACTCGAGGATCGAGTTGAAGTAAGGGAACTCGTCTGGGGCTTAGATGAATCGGTGAGTCGAGCAAACGAGTTCGGTGAGTTCGACCTGATTTTGATGTCGGATTTGTTCTATGACTCAGAGGACATGGCCCCTCTAGCACACATCCTAAAGATCATCTCTGGGAAAAATAGCAAAATCTGGGCAGCTTCTGAGATTCGACCATGGACTGTCGAGTGCCTTACAGAGTTCATGAATGAAGGATTCAAGGTCGAAGAGTCACAAGTTCAACTAGACGAACCTCGTGAGGAAGTCGACGACCACGCCATTTTAGACTCGTTTTCTATTTTCCATCTCCAACCACCTGATGAAGAAAGGAACTGCTAA 675 48.3 MGVREFQISDTNVVIHELDDLYDSTTGRVLTGSWVWNSAFVLAEWMATRCKLFDFDFRDKTVIELGAGAGLPGLMAALLGARRVVLTDVEPLLPGLLRNVDANGLEDRVEVRELVWGLDESVSRANEFGEFDLILMSDLFYDSEDMAPLAHILKIISGKNSKIWAASEIRPWTVECLTEFMNEGFKVEESQVQLDEPREEVDDHAILDSFSIFHLQPPDEERNC 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8831968 8832642 - Carg23234-RA Car16g01030 164182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01030 224 Pfam Lysine methyltransferase 31 171 IPR019410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01030 K21804 METTL21A; protein N-lysine methyltransferase METTL21A [EC:2.1.1.-] - csv:101216031 324.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00431 Car-Chr7:2186947 Car16g01030 Car-Chr16:8831968 1.10E-06 dispersed
Car16g01030 Car-Chr16:8831968 Car20g00454 Car-Chr20:2545919 8.80E-16 dispersed
Car16g01030 Car-Chr16:8831968 Car03g00687 Car-Chr3:6051036 6.21E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g598 Blo02g01004 . . Bda08g00617 Bpe05g00539 . . . . Cmo16g01138 . . . . . Cpe14g00899 . . . . . . . . Cla10g00191 Cam10g0197 Cec10g0203 Cco10g0204 Clacu10g0201 Cmu10g1045 Cre10g0451 . . . Cone9ag0624 . . . Cme06g02504 . . . . . . Bma05g00396 . . . . . Cma16g01088 . Car16g01030 . . . . . . . . . . . . . . . . . . Chy06g02111 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013523 1 0 2 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01030 Car_Chr16 FPKM 15.898625 16.356794 13.169894 14.641133 8.359278 8.985747 9.14151 9.094614 9.570611 10.656641