Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01031 TTTTGGTCTGTTAAAACCCACTCTCGTCTTCCCCACCTCTGCCACAGACGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTCTTCATCGACTGCAATCATGGTGGAATCGGTGGAGTTACCGAGTCGACTCGGAATTCTTCCCTTCAGAAACAAGGTGCTTTTACCAGGCGCCATTATTCGGATTCGATGCACTTCTTCCAGCAGTGTGAAATTGGTGGAGCAAGAGTTGTGGCAGCGAGAAGAGAAGGGATTGATTGGTATTCTTCCAGTTCGAGATGATGCTGACGCCTCAGCGATAGGTCCTGTGTTATCTCAAGGTGTGGGAAGTGATTCTGGAGATCGTAGCTCGAGGGTTCAATCTGGTACCTCTGACTCGCAAAGGGTAGATGGGAAAAATCACCAGGAAGTTATTCAATGGCATTCAAGGGGTGTTGCTGCTCGTGCCTTGCAACTTTCTAGAGGAGTGGAGAAACCGAGTGGAAGAGTGACATATACAGTTGTGCTAGAAGGTTTATGCAGATTTACTGTCCAGGAACTTAGCACCAGGGGAACATATTATACTGCACGAATATCACATTCAGAAATGACAAAGGAAGAGATGGAGCAAGTGGAGCAAGACCCCGAATTTGTTTCATTATCTCGACAATTTAAAGCTACTGCGATGGAGCTTATATCTGTTCTTGAACAGAAACAAAAAACTGGAGGAAGGATTAAAGTTCTTTTGGAGACAGTTCCAGTTCATAAACTGGCTGATATATTTGTCGCCAGCTTTGAGATGAGTTTTGAAGAGCAATTATCTATGCTGGATTCAGTTGACTTAAGAGTAAGGCTTTCAAAAGCAATGGAGTTAGTTGACAGGCATTTGCAGTCAATACGTGTAGCTGAGAAGATTACGCAAAAAGTAGAAGGACAGTTATCAAAATCACAGAAAGAATTCCTTTTGCGCCAGCAGATGAGGGCCATAAAGGAGGAGCTTGGTGATGATCACGATGAAGATGATTTGGTTGCCCTGGAAAGAAAGATGCAAAGTGCTGAAATGCCTGCCAATATCTGGAAGCATGCCCAGAGGGAGCTGAGGAGCCTTAAAAAGATGCAACCTCAACAACCGGGATATAATAGCTTGCGAGTTTACCTCGAGCTTCTTGCTGACCTTCCATGGAAAAAGGCTACTGAAGAACATGAATTAGACTTGAAAGCTGCCAAGGAACGTCTTGATAGTGACCACTATGGTTTGGTCAAGGTCAAGCAACGAATTATTGAATATCTTGCTGTTCGGAAGCTTAAGCCAGATGCAAGAGGGCCTGTGCTATGCTTTGTTGGGCCACCAGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGCAGAAAATTTGTACGCATATCCCTGGGTGGTGTTAAAGATGAGGCTGACATTAGAGGACATAGGAGGACCTACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTGAAGAGAGTAGCTGTTTGCAACCCAGTCATGCTATTAGATGAGATTGACAAGACAGGTTCTGATGTGCGAGGCGATCCAGCTTCAGCTCTACTGGAGGTTCTTGACCCTGAACAGAACAAGAAGTTCAATGATCATTATTTGAATGTCCCATTTGACCTTTCAAATGTCGTATTTGTGGCCACTGCTAACAGAATGCAGCCCATACCTCCTCCTCTTTTAGATAGGATGGAAGTCATTGAGCTGCCTGGATACACACCAGAGGAAAAACTTAAGATTGCAATGCACCATTTGATTCCTCGAGTTTTAGAACAACATGGACTAAGCGCTGAATTTCTTCAAATTCCAGAGGCTATGGTTAAACTTGTTATTCAAAGATACACTAGAGAGGCTGGTGTACGAAACCTTGAGAGAAATTTGGCAGCCTTGGCTCGTGCTGCTGCTGTTAGAGTTGTGGAAAGAGATCAAACTGCCCCGTTGAATAAAGATGTGCATCAGGTTTCTTCTCCTCTGTTGGAAAACAGACTTTCTGATGGAGCTGAAGTAGATATGGAGGTCATCCCAATCGGAGCGGATCATGAGATGCCAAACCCGTTGAGGATGGCCTCTCCATTGGTTGTTGATGAGGCTATGCTTGAAAAAGTGCTTGGGCCTCCTAGGTTTGATGACAGAGAAGCAGCCGAGCGGGTTATATCACCTGGGATATCGGTTGGATTGGTTTGGACTGCCTTTGGGGGAGAGGTTCAGTTCGTGGAGGCTACAGCAATGTCTGGAAAGGGAGAATTACATCTCACTGGCCAGCTAGGTGACGTCATTAAAGAATCAGCTCAGATAGCCCTTACCTGGGTACGAGCGAGGGCAACAGATCTGAAACTGGCAGCAGCTTGTGAATCTAATCTTTTGGAGGGTCGTGATATTCATATACATTTTCCCGCTGGTGCGGTGCCTAAGGATGGGCCTTCAGCTGGTGTGACTCTTGTAACAGCTCTGGTCTCACTGTTTGGTAAGAAAAGAGTTAGGGCTGATACTGCAATGACAGGAGAGATGACTCTGAGGGGTCTTGTTCTACCTGTTGGTGGCATCAAGGACAAGATATTAGCTGCACATCGTTATGGGATAAAGAGGGTTATTCTCCCAGAGAGAAATTTGAAAGATTTAGCGGAAGTTCCTTCAGCCGTGCTTGCTAGTTTGGAGATATTACTAGCTAAGCGGATGGAAGACGTCCTGGAACAGGCTTTTGAAGGTGGGTGTCCATGGAGGCTACACCCCAAGTTATGA 2766 45.66 FWSVKTHSRLPHLCHRRLSLSLSLSLSLSSSSTAIMVESVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDDADASAIGPVLSQGVGSDSGDRSSRVQSGTSDSQRVDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGRVTYTVVLEGLCRFTVQELSTRGTYYTARISHSEMTKEEMEQVEQDPEFVSLSRQFKATAMELISVLEQKQKTGGRIKVLLETVPVHKLADIFVASFEMSFEEQLSMLDSVDLRVRLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDHDEDDLVALERKMQSAEMPANIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKATEEHELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFNDHYLNVPFDLSNVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMHHLIPRVLEQHGLSAEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVVERDQTAPLNKDVHQVSSPLLENRLSDGAEVDMEVIPIGADHEMPNPLRMASPLVVDEAMLEKVLGPPRFDDREAAERVISPGISVGLVWTAFGGEVQFVEATAMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLAAACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGKKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLAEVPSAVLASLEILLAKRMEDVLEQAFEGGCPWRLHPKL 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8833579 8843505 - Carg23235-RA Car16g01031 164183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01031 921 ProSiteProfiles Lon proteolytic domain profile. 726 911 IPR008269 GO:0004176|GO:0004252|GO:0006508
Car16g01031 921 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 38 921 IPR027501 GO:0004252|GO:0006515
Car16g01031 921 CDD AAA 420 581 - -
Car16g01031 921 MobiDBLite consensus disorder prediction 111 130 - -
Car16g01031 921 ProSiteProfiles Lon N-terminal domain profile. 46 289 IPR003111 -
Car16g01031 921 SMART AAA_5 435 580 IPR003593 -
Car16g01031 921 Pfam ATP-dependent protease La (LON) substrate-binding domain 48 289 IPR003111 -
Car16g01031 921 Pfam ATPase family associated with various cellular activities (AAA) 439 576 IPR003959 GO:0005524|GO:0016887
Car16g01031 921 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 814 822 IPR008268 GO:0004176|GO:0004252|GO:0006508
Car16g01031 921 MobiDBLite consensus disorder prediction 104 134 - -
Car16g01031 921 Pfam Lon protease (S16) C-terminal proteolytic domain 703 910 IPR008269 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01031 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - csv:101213865 1633.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00990 Car-Chr12:9938286 Car16g01031 Car-Chr16:8833579 7.53E-157 transposed
Car16g01031 Car-Chr16:8833579 Car05g01010 Car-Chr5:9629222 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01031 Car_Chr16 FPKM 3.177148 3.876444 0.776746 1.029697 5.59048 5.915351 5.984854 0.844302 0.640106 0.568679