Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01038 ATGGATTCCTTAGCTTCGATCAGCGAAGAGCTTGCAGATATCGAGGGGCAAATCAATGATATCCTCCGAGCTTTGTCAAATGGATTTCAGAAGTTGGAGAAGATCAAGGATACAAATAGGCGGAGTAGACAATTGGAAGAGCTGACTGATAAGATGCGAGAATGTAAGAGGCTTATAAAAGATTTCGATCGAGAAGTCAAGGATTTGGAAGGCGGGAATGACTCGAACACTAATAAAATGCTTAGTGAGAGGAAGCAGGCTATGATCAAAGAGTTGAACTCATATGTTGCCCTTAAAAAGCAGTAA 306 41.18 MDSLASISEELADIEGQINDILRALSNGFQKLEKIKDTNRRSRQLEELTDKMRECKRLIKDFDREVKDLEGGNDSNTNKMLSERKQAMIKELNSYVALKKQ 101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8903653 8905918 - Carg23242-RA Car16g01038 164190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01038 101 Coils Coil 4 24 - -
Car16g01038 101 Coils Coil 45 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01038 K08494 NSPN; novel plant SNARE - csv:101208413 186.037
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01038 Car-Chr16:8903653 Car17g00371 Car-Chr17:2367721 4.84E-28 dispersed
Car16g01038 Car-Chr16:8903653 Car05g01001 Car-Chr5:9556158 5.44E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g574 . . . . . . Bma07g00986 . Cmo06g00850 Cmo16g01145 . . . . Sed07g1309 Cpe14g00906 . Bhi11g00095 Tan01g2117 Cmetu06g1743 . Hepe06g1072 Mch10g1608 . Cla10g00202 Cam10g0208 Cec10g0213 Cco10g0214 Clacu10g0211 Cmu10g1054 Cre10g0462 Cone8ag0438 Cone12ag0423 . . Lsi07g01243 . . Cme06g02514 . Blo19g00158 . Bda09g00689 Bpe08g00871 . . . . . . Cma06g00827 Cma16g01096 . Car16g01038 . . . . . . . . . . . . . . . . . Csa03g00217 Chy06g02103 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001212 4 4 3 3 2 2 6 2 2 2 2 2 3 3 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01038 Car_Chr16 FPKM 18.539259 16.544064 5.05854 4.242535 22.437054 21.113604 22.675005 2.182841 2.435254 2.374074