Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01039 ATGGCGTTTTCAAAGCTTTTCCCTGAGTTCTACGAAGGATTTTCCATGACCCAAACCACGTCTCTGCTATTGCGATTTCCGTTTTTCCCTTTCGTTACGAAATCACTGGCTTCTCAAATCTTCCGCCATTTCCGTTGTCGCGAGTTGCTTCGAGTTCACTCGCGATTAATCCTCCTCCTCTCTTTGCCGTTCATTTACTTCTTTCTTTCGAATCCTCGTCGTTCTGTTGTTCTCAAGTTGTTTGTCGTACTTTTCTTCTCCATCGCGGCTTTGATTTTTCTCAATCTTGCAGTCCCTCGTTTCCCTTCTTTGATTCGTTTGTTTCTTGTTCGATCGTCTCCAATTAACGCGTCGTTCTCATCTTCTGCTGCGACGAAGGCTGTTTCCAATGTTCGTTGGTCGATTGGGTCGAACCCCAAATCGGAGAAACGGTTGATGTCGGGTTCTTGGGTGAAAGTTTACAGTAATGGCGACGTTTACGAGGGGGAATTTCATCAAGGGAGGTGCTCGGGTAGTGGGGTTTATCACTACCATATGAGTGGAAGATATGAAGGCGATTGGATTGATGAGAAGTATGATGGGTATGGCGTAGAGACATGGGCGAAAGGGAGTAGGTACCGTGGTCAGTACAGACAAGGCTTGAGGAATGGAATTGGGATTTACAGATTCTACACAGGGGATGTCTATGCTGGGGAGTGGTCTAATGGCCAGTGCCATGGTTCTGGAGTTCATACTTGTCAAGATGGGAGCCGCTATGTTGGGGAGTTCAAGTGGGGTGTCAAACATGGATTGGGTCACTACCATTATAGAAACGGAGATACGTACGCAGGAGAGTATTTTGCAGACAAGATGCACGGCTTTGGAGTTTATCGGTTTGGCAATGGACATCGTTACGAGGGAGCTTGGCACGAAGGAAATAGGCAAGGGCTTGGTATGTACACTTTTAGAAATGGAGAGACACAGTCTGGTCATTGGCAAAATGGTGTTCTTGATGTGCCCAGTCTTGAAAGTAGCCATCCAGGGTCTTCTTATGCTGTCAGCCATGCTAAGGTTCTCGCTGCAGTCCAGGAAGCAAGGAGAGCTGCAGAGAAAGCATTTGATGCAGGAAGGGTGGACGAAAGAGTTAACAAAGCTGTAGCTGCTGCTAATAAAGCAGCAAACGCAGCAAGAGTTGCAGCTGTGAAGGCTGTCCAGAAACAAATGGATCAAGAAACCTACACCAACCCACCAATCTTACTGGTCTGA 1245 46.99 MAFSKLFPEFYEGFSMTQTTSLLLRFPFFPFVTKSLASQIFRHFRCRELLRVHSRLILLLSLPFIYFFLSNPRRSVVLKLFVVLFFSIAALIFLNLAVPRFPSLIRLFLVRSSPINASFSSSAATKAVSNVRWSIGSNPKSEKRLMSGSWVKVYSNGDVYEGEFHQGRCSGSGVYHYHMSGRYEGDWIDEKYDGYGVETWAKGSRYRGQYRQGLRNGIGIYRFYTGDVYAGEWSNGQCHGSGVHTCQDGSRYVGEFKWGVKHGLGHYHYRNGDTYAGEYFADKMHGFGVYRFGNGHRYEGAWHEGNRQGLGMYTFRNGETQSGHWQNGVLDVPSLESSHPGSSYAVSHAKVLAAVQEARRAAEKAFDAGRVDERVNKAVAAANKAANAARVAAVKAVQKQMDQETYTNPPILLV 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8910234 8914006 - Carg23243-RA Car16g01039 164191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01039 414 Pfam MORN repeat 298 319 IPR003409 -
Car16g01039 414 Pfam MORN repeat 206 228 IPR003409 -
Car16g01039 414 Pfam MORN repeat 160 178 IPR003409 -
Car16g01039 414 Pfam MORN repeat 252 274 IPR003409 -
Car16g01039 414 Pfam MORN repeat 275 297 IPR003409 -
Car16g01039 414 Pfam MORN repeat 229 251 IPR003409 -
Car16g01039 414 Pfam MORN repeat 183 205 IPR003409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01039 - - - csv:101208169 719.539
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00888 Car-Chr8:5962741 Car16g01039 Car-Chr16:8910234 1.68E-179 dispersed
Car09g00721 Car-Chr9:4273677 Car16g01039 Car-Chr16:8910234 1.22E-102 dispersed
Car16g01039 Car-Chr16:8910234 Car17g00069 Car-Chr17:392166 2.02E-167 dispersed
Car16g01039 Car-Chr16:8910234 Car05g01000 Car-Chr5:9551276 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010482 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01039 Car_Chr16 FPKM 7.136649 7.908872 15.174081 16.083941 4.496025 4.878636 5.356333 29.921574 26.754341 28.609354