Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01046 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGACCTCCTGATAAGCCTGTATTGTGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAACTCTTACAAACTATACCCCTCTTCACGCTCGGGCGGATCCTGATGAGTGCGAGGATAAAAGGGTCTCTAAGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGATGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGACAGTCGATGAAGATACGAGTTATAGATCAAGTTCGGGATCGGCCATATCAAACTCGGAGAGCTGTCAACAATTTGGTAGTGCAGATGCAAGTGATCTGACAGGCCCCTCACAGTCAACAGCGTGGGAGACGATAGTGCCCTCGAGAAAGAGGACCTGCGTTGGTCGTTCGAAGTCTACTGCAGTTGAGAAACTCACTCAAGATCTATACACGATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGATAACGAAACTCCGATGGTCTCTGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCGATTACCCGAGAAGAGGAGTCGGAAGCAAGCTCGATTTCAGTTGATAATAAACAATTCACCGTAAACGAGGTTTATTCAGAGCCCTCCATCCTTCCTGTACATTATGAAGCTGACAACAAGACTGTAAATTTTTCCACTCTTGGAATTGGGAGAAAGCACTCTAATGGACAAGGGTTCTTGCAGGAACAAATTAAAAGGGACAGGCCTCAATCAGAAAAAACACAAGCACTTGGAAACCGTAACTCGCCGCTCTGTAATATAGATCTAACGGACATTCTCAACTTCAGGGAGTTTACGAAGCAATTGACTAGCGAAGATCAGCAAGAATTAATGAAGTATCTTCCGTCTGTTGATACCGAAGAGCTTCCCGAAAGCTTGAATAGCATGTTTGAAAGCCCTGAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTGTTCGATTTCTCCTTTCCGGGTGCGAAAAGAGAAGACTGCAGGAGTTTGAGTAGGCTCGTGTTGTGGGATTTGTCAAAATCGAAATGGGTCGAACGGTATCATTTACTCAAGAAATGTAGCAGTGGAGTGGCTGTTCAAGGATTTGCTGCTGCATCAAGTGGCTTTATGAACGGAAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACCAGGACTGCAATGAAGAGTCCCAAAAGGGGGACGACAAAGACGAGCGTGGAAAGCAAGGAACTCGTCGACAGCGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCTCTCCATTTCGATGAGGATAGTTTGGACCAGGATCTCCTATTGGATGTGAGGTCGAACAACTCCTTTCCTCAAGCCGAGCTCCTTCATCCGTCCCTGAGTTTTAGTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCATTGA 1620 45.25 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARADPDECEDKRVSKWKNLSMCKNKEVKLLKRKQYQDNGDVVGVIPDHAQSFHKTVDEDTSYRSSSGSAISNSESCQQFGSADASDLTGPSQSTAWETIVPSRKRTCVGRSKSTAVEKLTQDLYTILREQQSYFSGSSEEDLLFDNETPMVSVEIGHGSVLMRHPSSITREEESEASSISVDNKQFTVNEVYSEPSILPVHYEADNKTVNFSTLGIGRKHSNGQGFLQEQIKRDRPQSEKTQALGNRNSPLCNIDLTDILNFREFTKQLTSEDQQELMKYLPSVDTEELPESLNSMFESPEFKENLNSFKQLLTEGVFDFSFPGAKREDCRSLSRLVLWDLSKSKWVERYHLLKKCSSGVAVQGFAAASSGFMNGKRVLDGQNKKLSETRTAMKSPKRGTTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSLDQDLLLDVRSNNSFPQAELLHPSLSFSAQQASNSSSSVNLRLMHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8977876 8985020 - Carg23250-RA Car16g01046 164198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01046 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Car16g01046 539 MobiDBLite consensus disorder prediction 104 142 - -
Car16g01046 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Car16g01046 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Car16g01046 539 Pfam Asx homology domain 284 368 IPR028020 -
Car16g01046 539 MobiDBLite consensus disorder prediction 110 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01046 Car-Chr16:8977876 Car19g00288 Car-Chr19:4332308 8.61E-109 dispersed
Car16g01046 Car-Chr16:8977876 Car02g01335 Car-Chr2:8829645 0 wgd
Car16g01046 Car-Chr16:8977876 Car05g00985 Car-Chr5:9390367 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4987 PF13919 ASXH 1.10E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01046 - - csv:101205985 961.059