Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01046 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGACCTCCTGATAAGCCTGTATTGTGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAACTCTTACAAACTATACCCCTCTTCACGCTCGGGCGGATCCTGATGAGTGCGAGGATAAAAGGGTCTCTAAGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGATGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGACAGTCGATGAAGATACGAGTTATAGATCAAGTTCGGGATCGGCCATATCAAACTCGGAGAGCTGTCAACAATTTGGTAGTGCAGATGCAAGTGATCTGACAGGCCCCTCACAGTCAACAGCGTGGGAGACGATAGTGCCCTCGAGAAAGAGGACCTGCGTTGGTCGTTCGAAGTCTACTGCAGTTGAGAAACTCACTCAAGATCTATACACGATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGATAACGAAACTCCGATGGTCTCTGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCGATTACCCGAGAAGAGGAGTCGGAAGCAAGCTCGATTTCAGTTGATAATAAACAATTCACCGTAAACGAGGTTTATTCAGAGCCCTCCATCCTTCCTGTACATTATGAAGCTGACAACAAGACTGTAAATTTTTCCACTCTTGGAATTGGGAGAAAGCACTCTAATGGACAAGGGTTCTTGCAGGAACAAATTAAAAGGGACAGGCCTCAATCAGAAAAAACACAAGCACTTGGAAACCGTAACTCGCCGCTCTGTAATATAGATCTAACGGACATTCTCAACTTCAGGGAGTTTACGAAGCAATTGACTAGCGAAGATCAGCAAGAATTAATGAAGTATCTTCCGTCTGTTGATACCGAAGAGCTTCCCGAAAGCTTGAATAGCATGTTTGAAAGCCCTGAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTGTTCGATTTCTCCTTTCCGGGTGCGAAAAGAGAAGACTGCAGGAGTTTGAGTAGGCTCGTGTTGTGGGATTTGTCAAAATCGAAATGGGTCGAACGGTATCATTTACTCAAGAAATGTAGCAGTGGAGTGGCTGTTCAAGGATTTGCTGCTGCATCAAGTGGCTTTATGAACGGAAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACCAGGACTGCAATGAAGAGTCCCAAAAGGGGGACGACAAAGACGAGCGTGGAAAGCAAGGAACTCGTCGACAGCGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCTCTCCATTTCGATGAGGATAGTTTGGACCAGGATCTCCTATTGGATGTGAGGTCGAACAACTCCTTTCCTCAAGCCGAGCTCCTTCATCCGTCCCTGAGTTTTAGTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCATTGA 1620 45.25 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARADPDECEDKRVSKWKNLSMCKNKEVKLLKRKQYQDNGDVVGVIPDHAQSFHKTVDEDTSYRSSSGSAISNSESCQQFGSADASDLTGPSQSTAWETIVPSRKRTCVGRSKSTAVEKLTQDLYTILREQQSYFSGSSEEDLLFDNETPMVSVEIGHGSVLMRHPSSITREEESEASSISVDNKQFTVNEVYSEPSILPVHYEADNKTVNFSTLGIGRKHSNGQGFLQEQIKRDRPQSEKTQALGNRNSPLCNIDLTDILNFREFTKQLTSEDQQELMKYLPSVDTEELPESLNSMFESPEFKENLNSFKQLLTEGVFDFSFPGAKREDCRSLSRLVLWDLSKSKWVERYHLLKKCSSGVAVQGFAAASSGFMNGKRVLDGQNKKLSETRTAMKSPKRGTTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSLDQDLLLDVRSNNSFPQAELLHPSLSFSAQQASNSSSSVNLRLMHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8977876 8985020 - Carg23250-RA Car16g01046 164198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01046 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Car16g01046 539 MobiDBLite consensus disorder prediction 104 142 - -
Car16g01046 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Car16g01046 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Car16g01046 539 Pfam Asx homology domain 284 368 IPR028020 -
Car16g01046 539 MobiDBLite consensus disorder prediction 110 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01046 - - - csv:101205985 961.059
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01046 Car-Chr16:8977876 Car19g00288 Car-Chr19:4332308 8.61E-109 dispersed
Car16g01046 Car-Chr16:8977876 Car02g01335 Car-Chr2:8829645 0 wgd
Car16g01046 Car-Chr16:8977876 Car05g00985 Car-Chr5:9390367 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g00679 . 59 336 C2C2-Gata Transcription Factor Family AT5G66320 51.4 1.3e-63 240.7
Car02g01335 . 1 511 C2C2-Gata Transcription Factor Family AT4G17570 52.2 3.1e-133 472.6
Car16g01046 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.0 7.7e-132 468.0
Car05g00985 . 5 481 C2C2-Gata Transcription Factor Family AT4G17570 52.9 1.6e-124 443.7
Car19g00289 . 47 170 C2C2-Gata Transcription Factor Family AT4G17570 66.1 1.2e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4987 PF13919 ASXH 1.10E-09 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01046 Car_Chr16 FPKM 21.55102 26.495787 32.389534 30.748545 19.838093 16.157995 18.658991 45.516167 42.922348 43.207008