Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car16g01053 | ATGATGTACGGACAGAGTAATGGCTGTGAATCGGATTTTGTTCTTCTGGAGACCATCCGCCGCCATTTATTGGGAGATTCCGAGCCGTACCGATGTGGGAATTTCGCCGTCGCCGGAGCCGCCGCGCCGGGGTTGTGCGGGAGCTCCAATTTCAGCAGTTTGTACCCTTGTTTGACTGAGAATTGGGGGGAATTGCCTCTTAAAGTGGATGATTCCGAGGACATGTTTCTCGCCGGAGTACTTCACGACGCCGTCCGCCTTGGTTGGGATCCTCTGCTCGGCTCATCGCCGTCGGAAGCTTTTAATTTTGGATTCTCTGATGTCAAGACAGAGCCCCTGATTCTTTCTCCGGCGGTGGTTCCGGCGAAGGTGGAGGTGGCGGAGACGACGGTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTATCGGGGTGTACGGCAACGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGTGACCCGGCGAAAAACGGGGCTCGGGTTTGGCTTGGGACGTTTGAGACGGCGGAGTATGCGGCGCTTGCTTATGACCGCGCCGCTTATCGGATGCGGGGCTCCAAAGCTCTTCTTAATTTTCCGCTTAGGGTTAATTCGGGTGAACCCGACCCGGTTAGAGTGATGTCGAAACGGTCGTCGTCTCGGTCTTCGCCGGAGCCTACTTCGTCGTCGTCGTCGGTAGAGAGTGGGTCCCCTAAGCGGCGGAAGAAGGTGGTGGCAGCAACTCAAGCTGCACTAGAGTCGATCCAATTAGTGGTGGGGACCAATGCAACACAAGTGGAAGCTGACGTGGCGAAGAGTACAAATGGCGAGCAATGA | 834 | 57.07 | MMYGQSNGCESDFVLLETIRRHLLGDSEPYRCGNFAVAGAAAPGLCGSSNFSSLYPCLTENWGELPLKVDDSEDMFLAGVLHDAVRLGWDPLLGSSPSEAFNFGFSDVKTEPLILSPAVVPAKVEVAETTVPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEYAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVMSKRSSSRSSPEPTSSSSSVESGSPKRRKKVVAATQAALESIQLVVGTNATQVEADVAKSTNGEQ | 277 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 9067133 | 9067966 | - | Carg24870-RA | Car16g01053 | 164205 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car16g01053 | 277 | MobiDBLite | consensus disorder prediction | 206 | 245 | - | - | |
| Car16g01053 | 277 | Pfam | AP2 domain | 141 | 191 | IPR001471 | GO:0003700|GO:0006355 | |
| Car16g01053 | 277 | ProSiteProfiles | AP2/ERF domain profile. | 141 | 199 | IPR001471 | GO:0003700|GO:0006355 | |
| Car16g01053 | 277 | MobiDBLite | consensus disorder prediction | 214 | 234 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00976 | Car-Chr5:9299388 | Car16g01053 | Car-Chr16:9067133 | 9.44E-136 | dispersed | |
| Car07g00173 | Car-Chr7:1007293 | Car16g01053 | Car-Chr16:9067133 | 6.56E-29 | dispersed | |
| Car07g00174 | Car-Chr7:1008468 | Car16g01053 | Car-Chr16:9067133 | 8.21E-30 | dispersed | |
| Car15g01010 | Car-Chr15:7890985 | Car16g01053 | Car-Chr16:9067133 | 1.26E-58 | dispersed | |
| Car16g01053 | Car-Chr16:9067133 | Car02g00728 | Car-Chr2:5383310 | 2.16E-29 | dispersed | |
| Car16g01053 | Car-Chr16:9067133 | Car16g01054 | Car-Chr16:9077095 | 7.75E-30 | tandem | |
| Car16g01053 | Car-Chr16:9067133 | Car02g01327 | Car-Chr2:8795070 | 3.67E-93 | wgd | |
| Car16g01053 | Car-Chr16:9067133 | Car05g00975 | Car-Chr5:9289512 | 4.13E-30 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4988 | PF00847 | AP2 | 1.30E-13 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car16g01053 | K09286 | - | csv:101203663 | 371.703 |