Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01059 ATGATGGCCGGCAACGACGATGGCCTTGGTTTGAGCCTTGGGTTGAGCTTTGATTCTCATCCCCACCGCCATTTGCAGCTAAATCTCATGCCGTCTTGGACTAATGATGCCTCCTCTGATCGGACTTCGGAAACTGGGCGATCGCTGCTCCGGGGTATTGATGTGAACCGGATTCCGCCGTCGACGGCGGATTGTGAGGAGGAAGCGGCGATGTCGAGCCCGAATAGTACGGTGTCGAGTGTGAGTGGGAAACGGAGTGAACGGGAAACGAACGGCGAGGATCTCGACGGCGATAGAGATTGTTTCAGAGGAATTAGCGATGAAGAAGACGGCGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGATAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGCTGGCTCTCGCGAAACAGTTAGGTCTCCGGCCAAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAGGTTGATTGCGAGTTTCTAAAGAGATGCTGTGAGAATCTGACGGATGAGAATAGGCGGTTGCAAAAAGAAGTACAGGAACTGAGAGCACTGAAACTTTCCCCACAATTCTACATGCACATGACCCCACCCACCACCCTTACCATGTGCCCGTCATGCGAGCGTGTCGCGGTCCCACCCTCCACGTCAGCCCCCACTACAGTGACACGAGTGGGCCAAGCCCAAGCCCAGGCCCACCACGCTCGGCCCATCCACATCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCCTTCAACGCCCTACACCCTCGCTCGTAA 837 54.36 MMAGNDDGLGLSLGLSFDSHPHRHLQLNLMPSWTNDASSDRTSETGRSLLRGIDVNRIPPSTADCEEEAAMSSPNSTVSSVSGKRSERETNGEDLDGDRDCFRGISDEEDGETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSAPTTVTRVGQAQAQAHHARPIHINPWASAIPARPFNALHPRS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9103007 9104638 - Carg24864-RA Car16g01059 164211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01059 278 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Car16g01059 278 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Car16g01059 278 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355|GO:0043565
Car16g01059 278 MobiDBLite consensus disorder prediction 68 85 - -
Car16g01059 278 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Car16g01059 278 Pfam HD-ZIP protein N terminus 2 89 IPR006712 GO:0005634
Car16g01059 278 Coils Coil 170 207 - -
Car16g01059 278 MobiDBLite consensus disorder prediction 32 46 - -
Car16g01059 278 MobiDBLite consensus disorder prediction 32 116 - -
Car16g01059 278 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00825 Car-Chr6:6386012 Car16g01059 Car-Chr16:9103007 1.20E-74 dispersed
Car07g00543 Car-Chr7:2754898 Car16g01059 Car-Chr16:9103007 3.47E-77 dispersed
Car12g00635 Car-Chr12:4282596 Car16g01059 Car-Chr16:9103007 1.76E-106 dispersed
Car14g00376 Car-Chr14:1884739 Car16g01059 Car-Chr16:9103007 2.64E-74 dispersed
Car16g01059 Car-Chr16:9103007 Car17g00882 Car-Chr17:7382958 3.23E-69 dispersed
Car16g01059 Car-Chr16:9103007 Car05g00970 Car-Chr5:9261036 9.35E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4990 PF04618 HD-ZIP_N 8.10E-22 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01059 K09338 - csv:101223208 446.432