Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01079 ATGAGGGGGGATTTCCTTTCATTTTCAGGGAAGGGGGACTTGGAAATTTCAGCCGCGTTATCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGGGAAGAACACCAAGAACTCGAAGAACAACAAGAAGGGTTTTCTTATTTTCTTTTACCCAACAAACGAACCCACTTCCGTTCTTCATATGAGAAAGCCCCAGTCCTCCCACATCGGTTTCCACTCTCTCTTCTTCCTTTGGGCGGTGGCGGTGGCGGTGGCGGTGGTTGTGTTCCTTCACTTCCTCCGGAGACCCCTTCTGTTGAGCCGCTCGCCGGAGCTGTCGTTTCTCCGATGGATCGCCCGGGGATGTTGAAGATTCCAGTATGGGGAGTAAAAATCCCCTTTGATTTGGATGGCAAATGCCCGGTATCAGGAATTGTCGAACAGGGTTCTGATTCGGCGGCGGAGCTGAGCCCTATCTTTAATGGGTCTCTTGAAAATCTTGTTGTTCCTGTTTCTGGTTTGATTCAGCCATTTGAGCGCCCTGATGAGAAGCCCCAGACAGCTACAGCCTCAGCTGAAGAGGCACAATTCGAGCGGAGCACTCGACGCGAACCCAAACGGGTCGATACCGATACCGATACCGAGATTTTGATGAGGAATCATCAGGTGCAGGTGTTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGGTTATGCACCTGGTTTGCAGTGTCTTCCTCAGCAGAAGGCAATGTCTCCGAAGCCGAAAGTTGTAGGGCTTGGCGACGAAATGATTTATAACAGTCCCCCACAGCAACAGCAACATGCTTTGCTCGACCAGCTCTACAAGGCGGCGGAGCTGGTCGGGACTGGGAACTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTATTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTATGAACAACCCGGTTAATCCTCCTCCACCTCACTGCCCAACACCGTTCGATGTGATCTTTAAGATGGGTGCTTACAAGGTGTTTTCCGAAATCTCCCCACTTGTTCAGTTTGTGAATTTCACCTGCAATCAGGCACTGCTCGAGGCTCTCGACGACGTTGGTCGAATTCACATTGTAGATTTTGATATTGGTTTTGGAGCACAATGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCAGGGTGCATCACTCAAAATCACTGCTTTTGCCTCTCCCTCGACTCATCATCCGATCGAACTCGGGCTTATGCGCGAAAATCTCACTCAATTTGCTAATGACATTGGGATAAGTTTTGAGTTCGAAATGATCAACTTCGATTCCTTGAACCAGAACTCCTTTTCGTTGCCATTTTCTCAAGCAAACGAAAACGAGGCTATTGCAGTAAACTTCCCTCTATGTTCGACATCGAATCAACCAGCATTACTTCCATCTCTCCTCCGTTTCATCAAACAACTCTCACCAAAACTCGTGGTTTCACTCGACCGAGGGTGCGATCGAAGTGACCTCCCATTTCCTCAGCATATGCTTCAGGCACTTCAATCCTACATTAACCTCCTGGAATCTCTGGATGCTATTAATATGAACTCGGATGCTGTGAACAAGATCGAGAGGTTTCTTTTGCAACCGAGAATCGAAAGGACTGTTCTGGGGCGGCTTCGAGCGCCTGAAAGAATGCCCCTTTGGAAAACACTCTTTGCCTCTGCTGGCTTTACACCAGTAAACTTCAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTCGAGAAACGGCAGGCTTCCCTAGTTTTATGCTGGCAGCGTCGGGAGCTCATCTCCGCTTCGGCCTGGAGATGTTGA 1914 49.27 MRGDFLSFSGKGDLEISAALSSSPICSGFAEKWVKKGEEHQELEEQQEGFSYFLLPNKRTHFRSSYEKAPVLPHRFPLSLLPLGGGGGGGGGCVPSLPPETPSVEPLAGAVVSPMDRPGMLKIPVWGVKIPFDLDGKCPVSGIVEQGSDSAAELSPIFNGSLENLVVPVSGLIQPFERPDEKPQTATASAEEAQFERSTRREPKRVDTDTDTEILMRNHQVQVLQQQQQQQQQLGYAPGLQCLPQQKAMSPKPKVVGLGDEMIYNSPPQQQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPIGKPLQRAAFYFKEALQLLLLMNNPVNPPPPHCPTPFDVIFKMGAYKVFSEISPLVQFVNFTCNQALLEALDDVGRIHIVDFDIGFGAQWASFMQELSLRNQGASLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEMINFDSLNQNSFSLPFSQANENEAIAVNFPLCSTSNQPALLPSLLRFIKQLSPKLVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIERTVLGRLRAPERMPLWKTLFASAGFTPVNFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9265873 9268074 - Carg28263-RA Car16g01079 164231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01079 637 ProSiteProfiles GRAS family profile. 266 636 IPR005202 -
Car16g01079 637 MobiDBLite consensus disorder prediction 194 208 - -
Car16g01079 637 Pfam GRAS domain family 276 636 IPR005202 -
Car16g01079 637 MobiDBLite consensus disorder prediction 177 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00747 Car-Chr8:4852654 Car16g01079 Car-Chr16:9265873 1.43E-145 dispersed
Car16g00682 Car-Chr16:4333471 Car16g01079 Car-Chr16:9265873 1.77E-68 dispersed
Car16g01079 Car-Chr16:9265873 Car17g00447 Car-Chr17:3024157 2.25E-137 dispersed
Car16g01079 Car-Chr16:9265873 Car16g01082 Car-Chr16:9296213 0 proximal
Car16g01079 Car-Chr16:9265873 Car06g00693 Car-Chr6:4205860 1.52E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4994 PF03514 GRAS 2.30E-91 CL0063 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01079 - - csv:101218630 770.385