Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01081 ATGAATTGGCTGTCTTTTAGTGACGATCCTGCTTGCTTGTTCGTGACGAATCCTGACGTGTTCGATCCGTTTTCTCCCACACGCAGCCTAAGCCAGGTTCTGAATCTGATGGATCAGTTCATGGAGGATCCGTTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGATGGGACGTGAGAGAAGACGACGACGCTCTGTATCTACGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGTGTGGAGCAGAACACTCTCATTATCAAAGGCGAGGCTGCTAAAGAATCTGAGGACGAATCTGATCGGAGACGATTCTCGAGCCGACTTGATTTGCCTGCTAACCTCTATCAGCTGGATTCAATCAAAGCAGAGATGAAGAATGGAGTTCTGAAAGTAGCTGTGCCAAAGGTGAAGGAAGAGGAGAGGAAGGATGTGAAGCAAATTACTGTCGAGTAG 474 48.52 MNWLSFSDDPACLFVTNPDVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKVAVPKVKEEERKDVKQITVE 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9285701 9286639 + Carg26181-RA Car16g01081 164233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01081 157 Pfam Hsp20/alpha crystallin family 61 156 IPR002068 -
Car16g01081 157 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 51 157 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01081 K13993 HSP20; HSP20 family protein - csv:101219106 240.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00694 Car-Chr6:4212766 Car16g01081 Car-Chr16:9285701 1.92E-86 dispersed
Car14g00082 Car-Chr14:440393 Car16g01081 Car-Chr16:9285701 5.77E-10 dispersed
Car15g00933 Car-Chr15:6671606 Car16g01081 Car-Chr16:9285701 3.34E-22 dispersed
Car16g01081 Car-Chr16:9285701 Car19g00435 Car-Chr19:6118465 8.38E-17 dispersed
Car16g01077 Car-Chr16:9255710 Car16g01081 Car-Chr16:9285701 3.91E-22 proximal
Car16g01078 Car-Chr16:9257158 Car16g01081 Car-Chr16:9285701 2.88E-09 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g532 Blo02g01045 Blo03g00162 . . Bpe05g00583 . . . . . . . . . . Cpe14g00946 . Bhi11g00197 . . . . . . Cla10g00259 Cam10g0265 Cec10g0273 Cco10g0271 Clacu10g0267 Cmu10g1110 Cre10g0518 Cone8ag0395 Cone12ag0380 . . . . . Cme06g02575 . . . . . . . Bma12g00642 . . . . Cma16g01142 . Car16g01081 . . . . . . . . . . . . . . . . . Csa03g00278 Chy06g02044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01081 Car_Chr16 FPKM 48.39856 51.612362 6.444706 6.718048 19.145771 19.246895 18.523609 27.533838 26.626438 27.254457