Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01082 ATGAGGGGGATTTCCTTTCATTTTCAGGGGAAGGGGGACTTGGAAATTTCAGCCGCGTTATCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGGGAAGAACACCAAGAACTCGAAGAACAACAAGAAGGGTTTTCTTATTTTCTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGTTTCCACTCTCTCTTCTTCCTTTGGCGGTGGCGGTGGCGGTGGCGGTGGTTGTGTTCCTTCACTTCCTCCGGAGACCCCTTCTGTTGAGCCGCTCGCCGGAGCTGGTGTTGGGAACGCCATTTTTTCTAGTGGATTGGAGGATTTGGAGATATGGGGAGTAAAAACCCCTTTGATTTGGATGGCAATGCCGGTATCGGAATTGTCGAACAGGGTTCTGAATTCGGCGGCGGAGCTGCCATTTGAGCGCCCTGATGAGAAGCCCCAGAGTTTGAATGCTGCTCAGGTTTTGTTGAACCAGCACCAGCCCCCTCAGAATCCTAGCTTCTTTGTGCCATTGATAACAGCAGCTACAGCCTCAGCTGAAGAGGCACATTCGAGCGGAGCATCGACGCGAACCCGACGGGTCGATACCGATACCGACAATGAGATTTTGATTGAGGAATCATCAGTGGCAGTGTTGCAGCAGCAGCAGCAGCAGCAGCTTGGTTATGCACCTGGTTTGCAGTGTCTTCCTCAGCAGAAGGCAATGTCTCCGAAGCCGAAAGTTGTAGGGCTTGGCGACGAAATGATTTATAACAATCCCCCACAGCAACAGCAACATGCTTTGCTCGACCAGCTCTACAAGGCGGCGGAGCTGGTCGGGACTGGGAACTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCCATTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTATGAACAACCCGGTTAATCCTCCTCCACCTCGCTGCCCGACACCGTTTGATGTGATCTTTAAGATGGGTGCTTACAAGGTGTTTTGCGAAATCTCCCCACTTGTTCAGTTTGTGAATTTCACCTGCAATCAGGCACTGCTCGAGGCTCTCGACGACGTTGGTCGAATTCACATTGTAGATTTTGATATTGGTTTTGGAGCACAATGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCAGGGTGCATCACTCAAAATCACTGCTTTTGCCTCTCCCTCGACTCATCATCCGATCGAACTCGGGCTTATGCGCGAAAATCTCACTCAATTTGCTAATGACATTGGGATAAGTTTCGAGTTCGAAATGATCAACTTCGATTCCTTGAACCAGAACTCCTTTTCGTTGCCATTTTCTCGAGCAAACGGAAAAACGAGCTATTGCAGCTCAGTAATCACTTCCTCTAAGTTCGACATCGATATCAACCAGCATTACTTCTCCATCCTCTCCCCGTTTCATCAAAACACTCTCATCACAATAACTCGTGTTTCACTCGAACCGAATTGA 1557 49.26 MRGISFHFQGKGDLEISAALSSSPICSGFAEKWVKKGEEHQELEEQQEGFSYFLLPNNEPTSVLHMRSPSPPTSVSTLSSSFGGGGGGGGGCVPSLPPETPSVEPLAGAGVGNAIFSSGLEDLEIWGVKTPLIWMAMPVSELSNRVLNSAAELPFERPDEKPQSLNAAQVLLNQHQPPQNPSFFVPLITAATASAEEAHSSGASTRTRRVDTDTDNEILIEESSVAVLQQQQQQQLGYAPGLQCLPQQKAMSPKPKVVGLGDEMIYNNPPQQQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPIGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPFDVIFKMGAYKVFCEISPLVQFVNFTCNQALLEALDDVGRIHIVDFDIGFGAQWASFMQELSLRNQGASLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEMINFDSLNQNSFSLPFSRANGKTSYCSSVITSSKFDIDINQHYFSILSPFHQNTLITITRVSLEPN 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9296213 9298035 - Carg26182-RA Car16g01082 164234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01082 518 MobiDBLite consensus disorder prediction 65 83 - -
Car16g01082 518 Pfam GRAS domain family 278 461 IPR005202 -
Car16g01082 518 ProSiteProfiles GRAS family profile. 268 518 IPR005202 -
Car16g01082 518 MobiDBLite consensus disorder prediction 65 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01082 - - - csv:101218630 478.789
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00693 Car16g01082 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01082 Car-Chr16:9296213 Car17g00447 Car-Chr17:3024157 1.37E-69 dispersed
Car16g01079 Car-Chr16:9265873 Car16g01082 Car-Chr16:9296213 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g526 . . . . . . . . Cmo06g00799 Cmo16g01195 . . . . Sed07g1687 Cpe14g00948 . Bhi11g00199 Tan01g2024 Cmetu06g2197 . Hepe06g1136 Mch10g1820 . Cla10g00261 Cam10g0267 Cec10g0274 Cco10g0272 Clacu10g0268 Cmu10g1111 Cre10g0519 . . . . Lsi07g01305 . . Cme06g02576 . . Bda07g00131 . . Bpe11g00361 . . . . . Cma06g00779 Cma16g01144 Car06g00693 Car16g01082 Cpe08g00744 . . . . . . . . . . . . . . . . Csa03g00280 Chy06g02042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012128 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4995 PF03514 GRAS 2.80E-49 CL0063 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01082 Car_Chr16 FPKM 11.15126 10.846483 0.975966 2.921079 5.612462 5.486479 4.530289 4.695889 3.583446 4.48568