Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01097 ATGACGGATTATCGTTTGTCGACGATGAATCTTTGGACCGACGAGAACGCGTCGTTGATGGACGCCTTTATGAACTCCGATCTCTCCTCTTACTGGGCTCCATCGGCTGCGTCGTCTCATTCTCTTCACAACCAACCGCCGCCACAGTCCTCCGCCTCAACTTCCACTCCGCCGCCGGATCCCCCTAAATCCGTCGCCGTTTTCAATCAGGAGACTCTGCAGCAGCGTCTCCAGGCGCTGATCGACGGCGCTAGGGAGAGCTGGACTTATGCGATTTTCTGGCAGTCGTCGTACGATTACCCCGATGGGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGGAAGGCGAAAGTAGTGACGTCGGCGGCTGAGCAAGCTCACCGGAAGAAGGTTCTCCGGGACCTTAACTCTTTGATTTCTGGATCAGCTGCCGGAGCCGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCCATGACTCAGTCGTTTGTTAATGGAGTTGGGTTACCGAGTCAGGCGTTCTTTGACTCGACGCCGATTTGGATCTCCGGCGCTGATCGGTTGTCGGCGTCGGCCTGTGAACGGGCAAGACAGGGGAAGGTTTTTGGGTTACAGACGATGGTTTGTATTCCTTCTCCAAACGGCGTTGTCGAAATGGGTTCGACGGAATTGATTCACCGGACGTCCGATTTGATGAACAAAGTCAAGATTCTGTTCAATTTCAACAATCTTGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCTGCTTCCACTGCCGACGAAGGGGAAAACGACCCGTCGTCGATGTGGATTAGTGAGCCGTCGAGTACAATCGCCACCACCGTCCCTTCCGGCGTTGTTCCGAGGAAGCTAACCCAATCGGAAAATCAAAAACAGAGCCAAAGCTTCTTAAACTTCTCCGACTACGGATTCGAATCAAATCCATCAAAGAGCATCACCACCGACACAACCACCACCACTACCACCACCAACACCCCGTCATTCAAGCCGGAATCCGGCGGGATGCTGAACTTCGGCAGTGGAAATCTCTTTTCCAGCCACTCACAGTACATAACAGACGAACAGAACGAAAAAAAGAGATCCCCTCCTTCTAGAAGTAGCAACGACGAAGGAATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCCGGGAAAGTAAAATCCGGCGACTCCGACCACTCAGATCTGGAAGCTTCCGTGATCAGAGAAGTCGATAGCTGTACAAAATCCATAGAACCCGAAAAACGACCTAGAAAACGAGGCAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGACGAGAGAAATTAAACCAGAAATTCTACGCTCTCCGAGCCGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCGCTGCTCGGCGACGCAGTTTCATACATCAACGAGCTCAAATCGAAGCTCCAAATCATAGAAACAGAGAAAACAGAGATGGGAAAACATCTAGAGTTCATCAAGAAGGAGATGGGAGGGAAAGATCTAGGGCATTACACAAACACAATCGATCAAGATCTAAAGACAGGGAACAGAAAAGTAATGGATATAGAGATCGAGGTTAAAATCATGGGATGGGACGCAATGATACGGATTCAAAGCAGTAAGAAGAATCATCCGGCGGCGAGATTGATGACGGCGTTGAAGGATTTGGATTTGGAAATGCTTCATGCGAGTGTGTCTGTAGTGAATGACCTGATGATTCAACAGGCGACGGTGAAGATGGGGAGCAGATGTTACACGCAGGAGCAGCTGAAAATGGCTCTGATCGCCCGGGTCGGCGGCGGCGGCGGCGGCGGAATGATGTAG 1914 50.89 MTDYRLSTMNLWTDENASLMDAFMNSDLSSYWAPSAASSHSLHNQPPPQSSASTSTPPPDPPKSVAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYPDGSVLGWGDGYYKGEEDKGKGKAKVVTSAAEQAHRKKVLRDLNSLISGSAAGADDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFDSTPIWISGADRLSASACERARQGKVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAAASTADEGENDPSSMWISEPSSTIATTVPSGVVPRKLTQSENQKQSQSFLNFSDYGFESNPSKSITTDTTTTTTTTNTPSFKPESGGMLNFGSGNLFSSHSQYITDEQNEKKRSPPSRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSIEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIIETEKTEMGKHLEFIKKEMGGKDLGHYTNTIDQDLKTGNRKVMDIEIEVKIMGWDAMIRIQSSKKNHPAARLMTALKDLDLEMLHASVSVVNDLMIQQATVKMGSRCYTQEQLKMALIARVGGGGGGGMM 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9398140 9400053 - Carg26197-RA Car16g01097 164249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01097 637 MobiDBLite consensus disorder prediction 329 462 - -
Car16g01097 637 MobiDBLite consensus disorder prediction 411 462 - -
Car16g01097 637 MobiDBLite consensus disorder prediction 388 405 - -
Car16g01097 637 MobiDBLite consensus disorder prediction 37 63 - -
Car16g01097 637 Pfam Helix-loop-helix DNA-binding domain 456 501 IPR011598 GO:0046983
Car16g01097 637 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Car16g01097 637 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 452 501 IPR011598 GO:0046983
Car16g01097 637 MobiDBLite consensus disorder prediction 329 353 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01373 Car16g01097 CCT
Car06g00579 Car16g01097 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00517 Car-Chr6:2898535 Car16g01097 Car-Chr16:9398140 6.40E-20 dispersed
Car06g00850 Car-Chr6:6669385 Car16g01097 Car-Chr16:9398140 6.21E-76 dispersed
Car14g01916 Car-Chr14:14708829 Car16g01097 Car-Chr16:9398140 1.99E-73 dispersed
Car16g00766 Car-Chr16:4862855 Car16g01097 Car-Chr16:9398140 1.49E-21 dispersed
Car16g01097 Car-Chr16:9398140 Car16g01160 Car-Chr16:9904348 7.30E-18 dispersed
Car02g01549 Car-Chr2:9976687 Car16g01097 Car-Chr16:9398140 1.18E-09 transposed
Car16g01097 Car-Chr16:9398140 Car19g00192 Car-Chr19:1804983 1.98E-37 wgd
Car16g01097 Car-Chr16:9398140 Car02g01373 Car-Chr2:9070511 0 wgd
Car16g01097 Car-Chr16:9398140 Car06g00579 Car-Chr6:3330995 1.17E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4996 PF14215 bHLH-MYC_N 4.60E-53 CL0161 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01097 K13422 - csv:101205372 1030.78