Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01115 ATGGAAATGCACGCCGTCTCCGAGCACTGCCGTCTTAGCCTCCGAGATTCTCTCTTTATTGCCGCTTGCGTGTTTTCGTCGCTTTCCTCCGATTCCGCTCTGGAACCTCTGGATCTCGGAAAATCTGAATGTGGTCCGCTTCCTCCTCCTTTCGCTCCTGCGCTTGAATGCTCCTACTTGGACTGTGATCTAGGGTTTTGGTTTTTGGATTTTCGATTTGTTTTAACTCTGTTTCTCTGTGGTGGTGCTGTTTCGACGAAGAGAACGAAGACGGAGGCGAGTAAGAATAAGACGCAGCTCCGGGATGAGATGGTGGAGGGAAAAAATTGTAAATCGAGAGAGGATAGAAATGGGCTAGCTCTTCTGAAGCTCAAGAGGCTTCAGGCTACAAATTCTGAAACTGCCAACAAAACTTCAGCTGTCAAGAATATGATGAATAGAAGTGGAGGTGATGCTTTAAGGGTCTCATCTCCTTGTGGTGTGAGATTACTTAGTGGCAATGTAGAAACCTTTTCTCGTTCAAGTGGCATGTCAAATGAGAGGGATGTTTTTTCTAAAAGGAGAGTAGACAAGTTTGAGTACGATGATTTAGAGTGGACCGAAAAGATTCCGGAATGCCCTGTATATTCTCCGTCAAAGGAGGAATTTGAGGATCCTTTGGTCTATTTGCAAAAGATAGCTCCTGAAGCCTCAAAATATGGCATATGCAAGATTATCTCCCCACTGATTGCTTCTGTTCCTGCTGGTGCTGTATTAAGTAAGGAGAAACCAGGTTTCAAGTTTACAACGAGAGTGCAACCTTTTCGCTTTGCTGAATGGGATACTGATGATCAGGTTACCTTTTACATGAGTGGAAGGAACTATTCATTTCGCGATTTTGAAAAATTTGCGAACAAGATATATGCCCGTAGATATAGTAGTTCTGGATGTCTACCTGCCTCATATATGGAAAAGGAATTTTGGCGTGAAATTTCTTGTGGAAGGACGGAAAGTGTAGAATATGCTTGCGATGTTGAGGGTAGTGCCTTTTCATCTTCTCCATCTGATGAGCTTGGGACAAGTAAATGGAATTTGAAGAATCTTTCTCGGCTGCCCAAGTCCATACTGCGCCTGCTGGAAAATCCAATACCGGGAGTAACGGACCCCATGCTTTATATTGGAATGCTGTTTAGTATGTTTGCGTGGCATGTGGAGGATCATTATCTATACAGTATTAATTATCATCATTGTGGGGCATCTAAAACTTGGTATGGCATTCCTGGTCAAGCAGCTTTGCAGTTTGAAAATGTTGTCAGGGAGCATGTATACACCCAGGATATCTTATCAACTGTTGGAGAGGATGGAGCATTTGACGTACTTCTGGGGAAAACAACGTTGTTTCCGCCCAGTATTTTGTTGGATCATAAGGTGCCTGTATACAGAGCTGTCCAGAAACCTGGGGAGTTTGTAATCACCTTCCCCAGAGCATATCATGCTGGATTCAGTCATGGCTTCAATTGTGGTGAAGCAGTAAACTTTGCAATGGGTGATTGGTTCCCCCTGGGTGCTGTTGCCAGCCAGCGGTATGCACTCCTGAACAGGATGCCTCTACTTCCTCATGAAGAGCTTCTATGTAAAGAAGCAATGCTTCTCTATACAAATTCAGAACTTGTAGACCCACATTATGCTTCTGCAGAGTCAACCTCTCATTATTCTGTCAAGACTTCTTTTGTGAGTATGATTCGCTTCCAGCATCGCGCTCGGTGGTCTTTGATGAAATCAAGAACATGCACTGGTGTTTCACCAAATTTTCATGGAACCATTCTTTGCAGCTTGTGCAAACGTGACTGCTATATTTCTTATATCAACTGCAATTGTTATGGACATCCAGTGTGTCTTCGTCATGATATCAAATCTCTGAACTTCTCGTGTGGTAGCAACCGTACACTCTTCTTGTGTGAGGATATTTTAGAAATGGAATCTGCAGCTCAGAAATTTGAGCAGGAGTGTGGAACATTGGATGAGATTAGGGGGCAAGCTTATAATGGTGAAGAATTATATTCTTATCCTCTGTTAAATTTATTTAAACGAGCTGTTGTGGACGGATACACTCCTTATTGCAAGATAGAAGTGCAGTTGAATTCTGAATTTACTGCTGCTGCTATCTGTCGCTTGGGAGAAAATGAGTGTGTTTCCAGTAGCCAGCCTACACAAAGTTGTATCACTGAAAACCATAGACCTGAACCATCAGATCCATCTCTCTCTTTTGAAGCGTCAACTTTTTGTTCAGTTGTAGACTATAACGAAACATTGTCCACCACTAGCCATGTAAGACCTGATTTCGAGCTCGACTTATCCATTTTTGGTAGTGAGTTTCTTGATCAAAGTTGCCATGTACAAAAAAATTCAAGTTTTGAACAGTCTTCTGAAGTTTCGAACAGGGCGCTTGAATCATCACGTAACAATTGCTCAAGTAAATCTCCAGGCAGTGTACGTGTATCAGAGCTGACGACTGTTGTAGATCGAGAAAGTGATGATTCTGATACAGAAATTTTTAGGGTCAAGCGTCGCCCTCTGAAGCTGGATAAAAAGACCGGGAACGATGCCACATCTTTAAAGCATTTTGCTAGCCAGGATGGCCGCAAAAGATTGAAGAGACTCCAAACAAATGGGAATTCCGAGGGAGTAACGCCATCTTATGGTCGTGGTACTGACAACTCACGTTATAAATTATACCCTTCCAGTACTTACAAGGACTCTGCAGTAAGTGATGCAATTGACAAGTATAGCAGAGGGAGTACAATTCCTATCTCTACTATGTGCCAGCGATTCAGCAATGAGAAACTAAGTAGTAATAGACAGCGCGTCTATGAACTCAACAATCGCAGGAGGGAAAGGTTTCAGCATGAGATGGGAAAGCCCAAAAGGGTACTACATCCACCACATCCCTCTATGGAGACTGGGCCGAAGCGTGTCAAAATTAGAGGCCCAACACTCGGTCGGCCCGATTGA 2991 43.26 MEMHAVSEHCRLSLRDSLFIAACVFSSLSSDSALEPLDLGKSECGPLPPPFAPALECSYLDCDLGFWFLDFRFVLTLFLCGGAVSTKRTKTEASKNKTQLRDEMVEGKNCKSREDRNGLALLKLKRLQATNSETANKTSAVKNMMNRSGGDALRVSSPCGVRLLSGNVETFSRSSGMSNERDVFSKRRVDKFEYDDLEWTEKIPECPVYSPSKEEFEDPLVYLQKIAPEASKYGICKIISPLIASVPAGAVLSKEKPGFKFTTRVQPFRFAEWDTDDQVTFYMSGRNYSFRDFEKFANKIYARRYSSSGCLPASYMEKEFWREISCGRTESVEYACDVEGSAFSSSPSDELGTSKWNLKNLSRLPKSILRLLENPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGQAALQFENVVREHVYTQDILSTVGEDGAFDVLLGKTTLFPPSILLDHKVPVYRAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAVASQRYALLNRMPLLPHEELLCKEAMLLYTNSELVDPHYASAESTSHYSVKTSFVSMIRFQHRARWSLMKSRTCTGVSPNFHGTILCSLCKRDCYISYINCNCYGHPVCLRHDIKSLNFSCGSNRTLFLCEDILEMESAAQKFEQECGTLDEIRGQAYNGEELYSYPLLNLFKRAVVDGYTPYCKIEVQLNSEFTAAAICRLGENECVSSSQPTQSCITENHRPEPSDPSLSFEASTFCSVVDYNETLSTTSHVRPDFELDLSIFGSEFLDQSCHVQKNSSFEQSSEVSNRALESSRNNCSSKSPGSVRVSELTTVVDRESDDSDTEIFRVKRRPLKLDKKTGNDATSLKHFASQDGRKRLKRLQTNGNSEGVTPSYGRGTDNSRYKLYPSSTYKDSAVSDAIDKYSRGSTIPISTMCQRFSNEKLSSNRQRVYELNNRRRERFQHEMGKPKRVLHPPHPSMETGPKRVKIRGPTLGRPD 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9594155 9601435 + Carg23594-RA Car16g01115 164267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01115 996 MobiDBLite consensus disorder prediction 882 899 - -
Car16g01115 996 Pfam JmjC domain, hydroxylase 383 506 IPR003347 -
Car16g01115 996 MobiDBLite consensus disorder prediction 964 996 - -
Car16g01115 996 Pfam C5HC2 zinc finger 603 654 IPR004198 -
Car16g01115 996 Pfam jmjN domain 207 239 IPR003349 -
Car16g01115 996 ProSiteProfiles JmjC domain profile. 353 523 IPR003347 -
Car16g01115 996 ProSiteProfiles JmjN domain profile. 206 247 IPR003349 -
Car16g01115 996 MobiDBLite consensus disorder prediction 858 899 - -
Car16g01115 996 MobiDBLite consensus disorder prediction 858 881 - -
Car16g01115 996 MobiDBLite consensus disorder prediction 801 823 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01115 - - - cmax:111465200 1729.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01115 Car-Chr16:9594155 Car18g00201 Car-Chr18:1148147 4.36E-77 dispersed
Car20g00799 Car-Chr20:4835301 Car16g01115 Car-Chr16:9594155 6.26E-167 transposed
Car16g01115 Car-Chr16:9594155 Car19g00173 Car-Chr19:1572092 0 wgd
Car16g01115 Car-Chr16:9594155 Car02g01389 Car-Chr2:9129074 2.27E-15 wgd
Car16g01115 Car-Chr16:9594155 Car06g00566 Car-Chr6:3227476 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4999 PF02373 JmjC 1.50E-39 CL0029 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01115 Car_Chr16 FPKM 41.266495 43.959457 44.872078 46.576645 29.707409 34.72583 30.32251 44.878082 42.27058 43.945297