Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01124 ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACACCGCCTCCTACTACCCAGGAGCAGACTTCAACCACAAGCGCTGGCGCAGTTAATCCTGATTGGTCAGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCTCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATACGCTCATCCGTCCATTCCCCCGGGATCATATCCTTTTAGCCCATTTGCAATGCCTTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACCGCAGGCAGTTTGGAGGGAGACGTTAAGCTACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAATAATGAGCTCGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTTCAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCAAGACACTTCGGAAGTTGAAGCATCTCAGAATGGTAACTCTATGCATGGTACTCAAAACGGAGGATCTAATACTCGGGCAATGGCTGCCATCCCACTGGCAACTGCTGGGGCCCCGGGTGTCGTTCCTGGTCCCCCAACCAACTTAAATATTGGAATGGACTATTGGGGTGCACCATCCACTATCCCTGCAATGCGTGGAAAGGTTCAATCCGCTCCAGTTGCTGGAGGACTAGTTGCCACTGGATCTCGGGATGGCATACAGTCACAACTTTGGTTGCAGGATGAGAGAGAGATTAAACGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGGCGTTCCCGGTTACGTAAGCAGGCAGAATGTGACGAATTAGCACACCGAGCTGAAGCTTTACAAGAAGAGAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAACTACTCTCAGAGAATGCTTCTCTGAAGGAACGACTCGGGGAAGTTCCAGGAAATGAAGAACTAAGGACCAGCAGGAACGGCCAGCACTCGAGTAATGAAACCACTCAACTTACAGAGTCAGCGGTCGTGCAAATCGGTAACAAGAATTGA 1212 48.1 MSGSEMEKPPKDKETKTPPPTTQEQTSTTSAGAVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLEGDVKLPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSAESASEGSSEGSDANSQNESQPKLGSRQDTSEVEASQNGNSMHGTQNGGSNTRAMAAIPLATAGAPGVVPGPPTNLNIGMDYWGAPSTIPAMRGKVQSAPVAGGLVATGSRDGIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLGEVPGNEELRTSRNGQHSSNETTQLTESAVVQIGNKN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9650808 9655322 - Carg23585-RA Car16g01124 164276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01124 403 MobiDBLite consensus disorder prediction 139 226 - -
Car16g01124 403 MobiDBLite consensus disorder prediction 1 42 - -
Car16g01124 403 MobiDBLite consensus disorder prediction 300 322 - -
Car16g01124 403 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 304 319 IPR004827 GO:0003700|GO:0006355
Car16g01124 403 MobiDBLite consensus disorder prediction 1 18 - -
Car16g01124 403 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 299 362 IPR004827 GO:0003700|GO:0006355
Car16g01124 403 Pfam Disordered region downstream of MFMR 135 262 - -
Car16g01124 403 Pfam G-box binding protein MFMR 2 96 IPR012900 -
Car16g01124 403 MobiDBLite consensus disorder prediction 146 226 - -
Car16g01124 403 Coils Coil 317 365 - -
Car16g01124 403 MobiDBLite consensus disorder prediction 363 403 - -
Car16g01124 403 MobiDBLite consensus disorder prediction 19 36 - -
Car16g01124 403 MobiDBLite consensus disorder prediction 375 403 - -
Car16g01124 403 Pfam bZIP transcription factor 297 359 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01399 Car16g01124 CCT
Car06g00559 Car16g01124 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00439 Car-Chr7:2224683 Car16g01124 Car-Chr16:9650808 1.19E-64 dispersed
Car14g00268 Car-Chr14:1277130 Car16g01124 Car-Chr16:9650808 1.50E-07 dispersed
Car14g01887 Car-Chr14:14551697 Car16g01124 Car-Chr16:9650808 1.55E-39 dispersed
Car16g01124 Car-Chr16:9650808 Car18g00997 Car-Chr18:10420111 3.37E-12 dispersed
Car16g01124 Car-Chr16:9650808 Car02g01399 Car-Chr2:9195983 2.64E-142 wgd
Car16g01124 Car-Chr16:9650808 Car06g00559 Car-Chr6:3160924 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5001 PF16596 MFMR_assoc 2.50E-49 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01124 K09060 - csv:101206627 693.73