Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01130 ATGTTCTACGGGATACATATCTTATTCTGCGTTTTTGCTGCCATTGCGCCCCCAGTTGTGTTTCATGGGCAGTCATTGACGGGCATCTTAGCAGCAATTGACGTCTTCTCTCAACATGTCTTGGTTGGGATATTCTACCTCATTGGATTTGCCTTTTTTTGCTTGGAATCACTTCTTAGTTTATGGGTTCTTCAGAAAATCTATTTGTATTTTAGGGGAAACAAGTGA 228 40.79 MFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSLWVLQKIYLYFRGNK 75
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9678208 9679494 + Carg23579-RA Car16g01130 164282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01130 75 Pfam SCAMP family 1 73 IPR007273 GO:0015031|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01130 K19995 SCAMP; secretory carrier-associated membrane protein - csv:101208570 145.976
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00548 Car16g01130 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00223 Car-Chr7:1230703 Car16g01130 Car-Chr16:9678208 1.12E-30 dispersed
Car16g01130 Car-Chr16:9678208 Car19g00761 Car-Chr19:8410803 1.09E-31 dispersed
Car16g01130 Car-Chr16:9678208 Car06g00548 Car-Chr6:3114425 6.67E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g766 . . Bda06g01237 . . Bpe07g00242 . . Cmo06g00622 Cmo16g01247 . . . . . Cpe14g00993 . . . . . . . . Cla10g00119 Cam10g0117 Cec10g0126 Cco10g0126 Clacu10g0123 Cmu10g0970 Cre10g0380 . . . . Lsi07g01152 . . Cme06g02431 . . . . . . . Bma12g00244 . . . Cma06g00615 Cma16g01199 Car06g00548 Car16g01130 . . . . . . . . . . . . . . . . . Csa03g00123 Chy06g02182 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011187 1 1 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 1 0 1 1 0 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01130 Car_Chr16 FPKM 4.868496 6.566519 7.501384 6.507845 14.721343 14.820039 14.936691 6.45802 6.202635 5.624904