Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car16g01139 | ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGGGGTGAGGATGGGGCTGCGCGTGGTAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACACAGATTAAGGACATGGCGTTGAAATTCTCCGGTGCTTATAGACAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAGCGACCTTACCCAGATTTTGACACTGCTTCAGAAGGGGTTCCATACCCCTACATAGGAGGGGCAAGTGCAAGCTCAACCCCTGCCTGGGACTTCCCTCGTGTTAATCGCCACCCACATACCAGATCTGACTCTAGATTTAAAGGGGTCTTCCGAGGAGATCAGACTCCTGGAGCCGATTCCTCCATATCAGCATGTGATGTGGTGCTCGAGGATGAGGATGAGTCGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATCACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGTTGGTGGGGCGAGAACTATGACAGAATAACGGAGCTCTATAATGTCCAGAGATTCAACCAGCAAGCTCTTCATACGCCACCAAGAACTGAGGACGGGAGGGATTCTTCCTACTCAAAGATGGGAAGGGATAGTCCGATGACTTCAGGGAACAAAGATTGGACGCCAAGAAACTATAAACCTTCTGGGAGTAAAGGATTTCCATCTGACCAGCATTTTGACCAAGGAAGCAGTCACCATTATGCAGGTTCAAGTGCCTATCCAGCAGGTAGCGCGAAAGGCGACATGTCGTCTATGGAAGCATCACGCACAACTACCTCTTCTAGAGACGAGCCTTCAATTTCCATTAGCAATGCAAGCGACATCGAGGCGGAGTGGGTCGAGGAAGATGATCCCGGGGTCTATATAACTATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTCAGATTCAGCCGTGAAAAGTTCGGGGAAATGAACGCGAAGCAATGGTGGGATGAGAACAGGGAGAGGATCCAAGCTCAATACCTTTAA | 1086 | 49.26 | MFTCIACTKQTDDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPRVNRHPHTRSDSRFKGVFRGDQTPGADSSISACDVVLEDEDESKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKMGRDSPMTSGNKDWTPRNYKPSGSKGFPSDQHFDQGSSHHYAGSSAYPAGSAKGDMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDDPGVYITIRQLVDGTRELRRVRFSREKFGEMNAKQWWDENRERIQAQYL | 361 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 9732501 | 9738168 | + | Carg23570-RA | Car16g01139 | 164291 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car16g01139 | 361 | MobiDBLite | consensus disorder prediction | 203 | 299 | - | - | |
| Car16g01139 | 361 | Pfam | Transcription factor BRX N-terminal domain | 23 | 56 | IPR027988 | - | |
| Car16g01139 | 361 | PANTHER | PROTEIN BREVIS RADIX-LIKE 1 | 1 | 361 | IPR044532 | - | |
| Car16g01139 | 361 | MobiDBLite | consensus disorder prediction | 11 | 30 | - | - | |
| Car16g01139 | 361 | MobiDBLite | consensus disorder prediction | 223 | 266 | - | - | |
| Car16g01139 | 361 | ProSiteProfiles | BRX domain profile. | 306 | 361 | IPR013591 | - | |
| Car16g01139 | 361 | PANTHER | BREVIS RADIX-LIKE PROTEIN-RELATED | 1 | 361 | - | - | |
| Car16g01139 | 361 | ProSiteProfiles | BRX domain profile. | 142 | 197 | IPR013591 | - | |
| Car16g01139 | 361 | MobiDBLite | consensus disorder prediction | 279 | 299 | - | - | |
| Car16g01139 | 361 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 305 | 360 | IPR013591 | - | |
| Car16g01139 | 361 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 142 | 196 | IPR013591 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g00540 | Car16g01139 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car16g01139 | Car-Chr16:9732501 | Car17g00659 | Car-Chr17:6112874 | 9.44E-105 | dispersed | |
| Car16g01139 | Car-Chr16:9732501 | Car06g00540 | Car-Chr6:3033872 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car16g01139 | - | - | csv:101210860 | 716.457 |