Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01140 ATGGAGAGGTATATGTTAATCAAGGAAGTTGGTGATGGTACTTTTGGAAGTGTCTGGCGAGCTATCAATAAGCAAACTGGGGAAGCTGTTGCAATTAAGAAAATGAAGAAAAAATATTACACATGGGAGGAGTGCGTCAATCTGAGAGAAGTGAAGTCACTGCGGAAGATGAATCATCCAAATATTGTTAAGCTGAAGGAAGTTATCAGGGAAAACAATATTTTGTACTTCGTATTTGAATACATGGATTGCAGTCTTTATCAACTTATGAAGGATAAGGAAAAACTCTTCTCAGAAGCTGAAGTGAGAAATTGGTGCTTTCAAGTTTTTCAAGGTCTTGCCTACATGCATCAGCGAGGTTATTTTCACCGTGACCTTAAACCAGAAAATTTATTAGTTGCTAAAGACTTGATAAAACTTGCTGATTTTGGGCTTGCTCGTGAAACTAGTGCACTACCACCCTATACTGAGTATGTTTCAACTCGATGGTATAGAGCTCCAGAGGTGCTGCTTCAGTCCTACCTTTATGGTCCTAAAGTTGATATGTGGGCAATGGGTGCTATAATGGCAGAGTTGTTTACTCTTCGTCCACTTTTTCCTGGAGCAAGCGAACCAGACCAAATCTACAAAATTTGCAGTATACTTGGCACTCCAACTATGGATACATGGTCTGATGGGCTCTGTCTTGCCAGGAATATCAATTATCAATACCCGCAGTTTAATCGAGTTCATCTCTCCGTTGTTATTCCTTCAGCGAGTGATGATGCAGTCAATCTTATTGCATCACTTTGTTCATGGGATCCATCCAAGAGACCAACAGCTATGGAAGCCCTCCAACATCCCTTCTTCCAGAGTTGCTACTATGTTCCACCGTCTCTTCGTGCTAGAGCGCCATTTGCTCGGACCCCTCCTTCTGCTGGAACAAAGAATTTGCTGGAGCAGCAGACTGCTAAGAAATATCCTGTGGCTTTATCTGATTCAAGAATCGCTGGTAATTTCTCCTCTCCTAAGTTGCCTGCGTTGTTGAGCTCAGGTGTGCAGAGGAAGTTGGATTTGGTGAACCCGGATGCAAATAAGAGTGATACAATTATGAAGAGCACAGCTAGACTACCAAAGTACCGACCGCCTGTGAGGAATAGCCCTACCAACTCTATCTACAGGGGAAATAATGTGCGTGGAGTTTCCGATACAGGCCAAAAGTTGGCAAACATGACAATTGCCCCTCGCAAGCCATCTATCGGGCAGCTTCTTCGGCCGATGAAAGCGGGTGTCCGTTGGAACGGTTCGTCTAGCGATCTGTTAATAAGGCCCGCTCAAGAGATTCAACATGGCAGTAATTACCCCAGGAAGGTTGCAGGATGA 1362 43.76 MERYMLIKEVGDGTFGSVWRAINKQTGEAVAIKKMKKKYYTWEECVNLREVKSLRKMNHPNIVKLKEVIRENNILYFVFEYMDCSLYQLMKDKEKLFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVAKDLIKLADFGLARETSALPPYTEYVSTRWYRAPEVLLQSYLYGPKVDMWAMGAIMAELFTLRPLFPGASEPDQIYKICSILGTPTMDTWSDGLCLARNINYQYPQFNRVHLSVVIPSASDDAVNLIASLCSWDPSKRPTAMEALQHPFFQSCYYVPPSLRARAPFARTPPSAGTKNLLEQQTAKKYPVALSDSRIAGNFSSPKLPALLSSGVQRKLDLVNPDANKSDTIMKSTARLPKYRPPVRNSPTNSIYRGNNVRGVSDTGQKLANMTIAPRKPSIGQLLRPMKAGVRWNGSSSDLLIRPAQEIQHGSNYPRKVAG 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9738891 9742902 - Carg23569-RA Car16g01140 164292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01140 453 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g01140 453 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Car16g01140 453 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g01140 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01140 K08829 MAK; male germ cell-associated kinase [EC:2.7.11.22] - csv:101210621 860.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00539 Car16g01140 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01140 Car-Chr16:9738891 Car18g00857 Car-Chr18:9596081 2.95E-69 dispersed
Car08g00360 Car-Chr8:2330899 Car16g01140 Car-Chr16:9738891 3.75E-18 transposed
Car16g01140 Car-Chr16:9738891 Car06g00539 Car-Chr6:3028724 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g880 . . . . . . Bma07g00966 Bma14g00111 Cmo06g00611 Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla10g00110 Cam10g0105 Cec10g0114 Cco10g0115 Clacu10g0111 Cmu10g0958 Cre10g0368 . . . . Lsi07g01139 . . Cme06g02415 Blo03g00840 . Bda07g00139 . Bpe08g01075 . . . . . . Cma06g00604 Cma16g00526 Car06g00539 Car16g01140 . . . . . . . . . . . . . . . . . Csa03g00109 Chy06g02196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005380 1 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89452 PF00069 Pkinase 1.80E-74 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01140 Car_Chr16 FPKM 10.361053 12.580335 2.899691 5.35682 4.075654 2.439423 4.059206 1.722801 1.752616 1.541851