Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01142 ATGGTAGCATCAATGGCGCCTTTTAAGCTGACGGAAGGAGCCGTGATGGTGATATGCAAGAGAGAATCGTCGGCAGAGACGTTCCAGCCGGTTGTACAAGTAATTGACTTAAAATTGGTTAACACTACGCAACAATCGGGCAGCGAGAGGTATAGATTGTTGCTTTCTGATGGAACTCATTACCAGCAAGGAATGCTGGGCACTCAGCTCAATGGATTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATCGTTCAATTGCGGCAGTATGTTTGTAATCCCGTTCAAGAACGCCTAATTATAATCGTCATTGAGTTGGATGTGATAAAGGAAATGTGTGACTTTATTGGCGAGCCTGTTCCAGCAACAAGATCAGTATCAGCCGCATTTAGTGGAAACCCCCAATCCTCTATGGGGGCTTCATCCGGCAGCGGAATACTTGGTAATGTGAATGTATCTGGTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACAAGTACCGCATGTGGGATCTCATTTTAACACTCCTAATTCTTGGACAAGGTTTAACGGTTCATCTCCTGTAACTGGGTCGTATGGTGATCAGAAGATGGCATACCACAACAATGGATCAGATATTCCCAGGCCACCTCTAAATGCTTATGCTTATGCCCCTCCTCAGCCAATACATCAGCAGCCACCTTCGATGTACAGTAACAGGGGAGGACCGGTAGCAAAAAATGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATGCGGTGGAGAAATACGAGCAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTATACTTCATTTCTAAAGGAAGCTTGAAACCTGCACAAAAGAACTATAACCATCTCAATAATGACTTTGAAATATTTCTTGAAAACACATCAACAATCCAAGCTTGCTTTGAGGATGACCAATCAATCCCCCATCAGCAGTTTCATTTCCATCACATTAGTGAGATTGAGGGCATGGGTAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACGTCTCTCATGAGAAAAAATGGTACCGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGCGTCGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAAATTGCAAAACATGTGTGACTCAGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGCGACTTCAATGGGAAGGCGGTGGGAACCATTTCAACAAGTCAGCTTTTCGTAGAGCCAGATTTCCCCGAGGCTCGTACATTAAGAGGGTGGTTCGAAAAGGAAGGAAGGAGTACTCCTTCTGTCTCCATATCCAGGGAAGTTGCTACCATGGGCAGGACAGATGTCCGTAAGACCATATCCCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACTGTTAGTGCAACTGTTTCATTCGTTAAGGTTGATAATTTCTGTTACACAGCATGTCCTATCATGATCGGGGATCGTCAATGCAGCAAAAAGGTTACAAATAACGGAGATGGAAAATGGAGATGCGACCGGTGTGATCAGTCTGTCGACGAATGTGACTACAGGTACATATTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTGACTGCATTTCAAGAAGGCGGTGAGGAGATCATGGGCTTACCTGCAAAAAGATTGTATTATTTGAAGTATGAAGAACAAGATGATGAAAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAGTAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTGAAATCAACTGTCATGAAGGCAGAAAGCATTAACTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGAAAAGCTCAGGGCAGGGAACACCATACAAAATCCTGGAGTTTTTCGCCCCGGATTGGAGAATATAGGTGGTGGACAGTTCGTGTCGCCCATTCGAAATAGTACCAATAATGTTGGCAGAGAATATGGTACACCGAACCGAGGTGTTCAGTATGGGGACCATCACAACAGTTCTTGGCCTACTCCATCCACACTGCATAACTCGCGCACGTACTGCAACAGCTGTGGGGGATCGGGTCACAGCTCAATGAACTGTCCGAGTATCATCAGCAGCCCTGCACCATCTGTTGGAGGAGGGATGTACTTAAATCGAGTTTCAGGCTCGTCTGGTCATGACTCTGGTGAATGCTTCAAATGCCATCAAACCGGGCACTGGGCTAGGGATTGCCCTGGTTTGGCCACTTTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTGA 2502 44.4 MVASMAPFKLTEGAVMVICKRESSAETFQPVVQVIDLKLVNTTQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATRSVSAAFSGNPQSSMGASSGSGILGNVNVSGASFEQPKVNQSQVPHVGSHFNTPNSWTRFNGSSPVTGSYGDQKMAYHNNGSDIPRPPLNAYAYAPPQPIHQQPPSMYSNRGGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDACGGEIRATCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQACFEDDQSIPHQQFHFHHISEIEGMGSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPDFPEARTLRGWFEKEGRSTPSVSISREVATMGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFVKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGLPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQRVKSTVMKAESINFSTESRFLLDLMEKLRAGNTIQNPGVFRPGLENIGGGQFVSPIRNSTNNVGREYGTPNRGVQYGDHHNSSWPTPSTLHNSRTYCNSCGGSGHSSMNCPSIISSPAPSVGGGMYLNRVSGSSGHDSGECFKCHQTGHWARDCPGLATFPPAYGNSGFTAR 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9754883 9757781 - Carg23566-RA Car16g01142 164294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01142 833 Pfam OB-fold nucleic acid binding domain 260 341 IPR004365 GO:0003676
Car16g01142 833 Pfam Replication factor-A C terminal domain 531 682 IPR013955 -
Car16g01142 833 Pfam Replication protein A OB domain 370 473 IPR031657 -
Car16g01142 833 ProSiteProfiles Zinc finger CCHC-type profile. 802 816 IPR001878 GO:0003676|GO:0008270
Car16g01142 833 Pfam Replication factor-A protein 1, N-terminal domain 10 111 IPR007199 GO:0003677|GO:0005634|GO:0006260
Car16g01142 833 ProSiteProfiles Zinc finger CCHC-type profile. 758 773 IPR001878 GO:0003676|GO:0008270
Car16g01142 833 Pfam Zinc knuckle 801 816 IPR001878 GO:0003676|GO:0008270
Car16g01142 833 MobiDBLite consensus disorder prediction 160 183 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00537 Car16g01142 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01325 Car-Chr5:12060730 Car16g01142 Car-Chr16:9754883 0 dispersed
Car11g00189 Car-Chr11:1080955 Car16g01142 Car-Chr16:9754883 3.65E-87 dispersed
Car16g01142 Car-Chr16:9754883 Car06g00537 Car-Chr6:3018858 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01142 K07466 - csv:101211358 1429.46