Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01144 ATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGAAAACCGTCAAATTTCTATCCAAAGCTCAAATCCAGTCTCTCTTTTCCTTCGGCTTCATCGGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTCCGTCCTGTTCTGTTCATATGACGGGTCCACAAACGCCGGATGCCGCTCAGAGAGGCGCCGAGACTGACGCCATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCTGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCGCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATCTCCGAGTTCACTGGCCATCCATTCGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTGCCAGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGCAAAGATCCCAAAAAATTCTTGTCACCAGATGTCCCCGACGACGAGATATACTAG 885 47.23 MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLAPSCSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9768451 9772550 - Carg23564-RA Car16g01144 164296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01144 294 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 66 255 IPR001907 GO:0004176|GO:0004252|GO:0006508
Car16g01144 294 Pfam Clp protease 80 254 IPR023562 -
Car16g01144 294 MobiDBLite consensus disorder prediction 55 75 - -
Car16g01144 294 MobiDBLite consensus disorder prediction 55 69 - -
Car16g01144 294 ProSitePatterns Endopeptidase Clp histidine active site. 174 187 IPR033135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01144 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101212086 501.516
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car15g01060 Car16g01144 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00316 Car-Chr1:1791117 Car16g01144 Car-Chr16:9768451 3.17E-69 dispersed
Car02g00268 Car-Chr2:1816775 Car16g01144 Car-Chr16:9768451 4.56E-50 dispersed
Car14g00851 Car-Chr14:5015499 Car16g01144 Car-Chr16:9768451 3.25E-55 dispersed
Car14g00884 Car-Chr14:5259988 Car16g01144 Car-Chr16:9768451 2.68E-49 dispersed
Car16g01144 Car-Chr16:9768451 Car06g00534 Car-Chr6:2997775 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010366 1 0 2 1 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01144 Car_Chr16 FPKM 16.505037 17.822515 9.258798 9.304901 17.046217 15.733346 16.047949 10.522243 10.083823 8.948536