Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01152 ATGCTTGAAATGTTCAAGTACCTCGTCGGTTCCGCTGGAGCAAGCGGCTACGGCTCTAAATCCACCGCCGAAGAAGTCAGTGAATCTTGTATGAACTCCATCACCGCCATAGTCACAGGAGCGACGTCGGGAATCGGAGAGGAGACGGCGAGAGTCTTGGCCAAGCGCGGTGTAAGGATCATCATTCCGGCTCGAAATCTAAAAGCCGCTGAGGAAGCGAAGGCGAGAATCGTATCCGAATCGGATTGTTTTGATCATTCACGAATCACGGTTATGGCTCTCGATCTTAGCTCTGTGAATTCCGTCGTGAACTTCGTCTCCAATTTCGAGTCGTTAAATTTGCCTCTTAATCTTCTCATAAACAACGCAGGCAGGTTCTGTTACGAACATGCGTTTTCTGAAGACGGAATTGAGATGACTTTCGCTACTAATTATCTTGGTCATTTTCTCTTGACGAAACTTCTATTGAATAGGATGATAGAAACCGCCAAATCGACAGGAGTCCAAGGCCGTATAGTGAATGTGACGTCCAACATCCATAGCTGGTTTTCGGGCGACATATTCGAATATCTCGGCCAGATAAGCCAGAAAAACAGAGTGTACGATTCGACACGTGCTTACGCGTTCTCCAAACTCGCAAATGTCTTGCACACTGTTCAACTCGCTCACAAACTCCAGGAAATGAAGGCGAATGTTACGGTGAACTGTGTTCATCCAGGCGTTGTGAAAACCAATTTGAACAGAGAACGCGAAGGCTTCGTCACAGATTTGATTTTCTACATGGCGTCCAAATCAAGGTTGTTGAAGACAATTCCTGAAGGTGCAGCAACAAGTTGTTACGTAGCCACGAATCGGAACGTGGAAAATGTGAATGGAAATTACTTCGCGGATTGCAACGATCAAGGAAGTTGCGAATGCAAAACGAAATCCGCGCATTTGGCTGAAGGCCTATGGTCCGCCTCCGAAACCATCGTCTCCACACTTACCGGTAAGCCTCAACCCTAA 1005 46.97 MLEMFKYLVGSAGASGYGSKSTAEEVSESCMNSITAIVTGATSGIGEETARVLAKRGVRIIIPARNLKAAEEAKARIVSESDCFDHSRITVMALDLSSVNSVVNFVSNFESLNLPLNLLINNAGRFCYEHAFSEDGIEMTFATNYLGHFLLTKLLLNRMIETAKSTGVQGRIVNVTSNIHSWFSGDIFEYLGQISQKNRVYDSTRAYAFSKLANVLHTVQLAHKLQEMKANVTVNCVHPGVVKTNLNREREGFVTDLIFYMASKSRLLKTIPEGAATSCYVATNRNVENVNGNYFADCNDQGSCECKTKSAHLAEGLWSASETIVSTLTGKPQP 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9820200 9821713 - Carg19489-RA Car16g01152 164304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01152 334 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Car16g01152 334 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Car16g01152 334 PRINTS Glucose/ribitol dehydrogenase family signature 164 180 IPR002347 -
Car16g01152 334 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Car16g01152 334 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Car16g01152 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 299 IPR036291 -
Car16g01152 334 Gene3D - 28 328 - -
Car16g01152 334 PANTHER OS06G0129100 PROTEIN 4 328 - -
Car16g01152 334 Pfam short chain dehydrogenase 35 179 IPR002347 -
Car16g01152 334 PANTHER RETINOL DEHYDROGENASE 4 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01152 - - K11153 csv:101209877 539.265
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00663 Car16g01152 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00663 Car-Chr2:4965830 Car16g01152 Car-Chr16:9820200 3.45E-150 dispersed
Car10g00100 Car-Chr10:455786 Car16g01152 Car-Chr16:9820200 9.75E-100 dispersed
Car13g00713 Car-Chr13:8350279 Car16g01152 Car-Chr16:9820200 2.81E-85 dispersed
Car15g00999 Car-Chr15:7808532 Car16g01152 Car-Chr16:9820200 3.75E-52 dispersed
Car15g01154 Car-Chr15:9074619 Car16g01152 Car-Chr16:9820200 3.93E-105 dispersed
Car16g00535 Car-Chr16:3385627 Car16g01152 Car-Chr16:9820200 1.78E-62 dispersed
Car06g00527 Car-Chr6:2965323 Car16g01152 Car-Chr16:9820200 1.74E-52 transposed
Car15g00800 Car-Chr15:4541582 Car16g01152 Car-Chr16:9820200 1.02E-06 transposed
Car16g01152 Car-Chr16:9820200 Car06g00526 Car-Chr6:2964328 4.03E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g203 . . . Bda08g00756 . Bpe07g00255 . . . Cmo16g01268 Cma02g00912 . Car02g00663 . . Cpe14g01011 . . . . . . . . Cla07g00789 Cam07g0852 Cec07g0905 Cco07g0887 Clacu07g0827 Cmu07g0830 Cre07g1188 . . . . Lsi07g01120 . . Cme07g01644 . . . . . . . Bma12g00444 . Cmo02g00919 . . Cma16g01224 . Car16g01152 Cpe08g00909 . . . . . . . . . . . . . . . . . Chy07g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002525 1 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 1 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01152 Car_Chr16 FPKM 4.691176 5.067264 7.649955 6.547837 8.237357 8.760843 8.931633 5.042318 5.045959 5.137266