Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01162 ATGGATCTCTCCTCCTCCATCTTTCTCCTCCTTGTTTTCCTCTTACCTATATCTTCTTTTGCAGAGATTCGCTTCACCGACATCAGAAATGACAATCGACCCATCATTCCTTTCGACGTCTTTGGCTTCAGCCATGGCGGTCGTCTCGAGCTCAACGTCTCTCATGTCTCACTCTCCGATACCAATCCAGATCTGGACCTCTCCAAGGCTGGATTCTTCCTCTGTACTCGAGAATCGTGGCTTCATGTGATCCAGCAATTAGAGGAAGCGGAAATCTCTTGCGCTCTTCAATCCGACCTCGTCAAACCGGTCTACACCTTCAATTCACTCAAAGGTCAGGACCGATTCGATGTTCTTTATTCCCAGAGTGATGCCGATCAATACACTCTCGTTTTTGCTAACTGTCTTCAGCAACTTAAGGTTTCTATGGGCGTTCGATCTGCTATGTACAATCTCGAAGGCAAAAGCGGTCGCCGGGATTATCTTTCGGCTGGGAAAACCATCCTCCCGAGGATTTACTTCATTTTCTCTATGATTTATTTCTTGCTCGCTATCGTATGGATTCATGTTCTTTACAAAAAGCGATCGACAGTTTATGGTATTCATTTCTTTATGCTTGCTGTTGTGATCTTGAAGGCTTTGAATCTTATCTGTGAGGCTGAGGATAAATCGTACATTAAGCGCACTGGGAGCGCCCATGGTTGGGATATTCTGTTCTACATATTTAGTTTCTTAAAGGGTATCACCTTGTTCACTTTGATCGTCTTGATTGGCACTGGTTGGTCTTTCTTGAAACCATATTTGCAGGACAAGGAGAAGAAGGTCTTGATGATTGTGATTCCATTGCAAGTGGTGGCTAATATTGCCCAGGTTGTGACTGATGAAACTGGGCCATTTGAGCAAGAATGGGTCACTTGGAAACAGGTGTTCTTGCTTGTTGATGTGATCTGTTGCTGTGCTGTTTTGTTCCCCATTGTTTGGTCAATCAAGAACTTGCGTGAGGCTGCACGAACAGATGGAAAAGCAGCTGTGAATTTGATGAAATTGACCCTTTTTAGACAGTATTACATTGTGGTTATATGCTATATCTACTTCACTCGGGTTGTCGTTTATGCACTTGAGACGATTACATCGTATCGGTATCTTTGGACGAGTGTGGTGGCCGGGGAACTGGCAACGTTTGCATTTTATGCATTCACTGGTTACAAGTTCAAGCCTGAGGCTCATAATCCTTATTTTGTAGTTGATGATGAGGAAGAGGAAGCAGCTGCTGAAGCACTGAAGCTTGAAGATGAGTTTGAATTGTGA 1308 43.88 MDLSSSIFLLLVFLLPISSFAEIRFTDIRNDNRPIIPFDVFGFSHGGRLELNVSHVSLSDTNPDLDLSKAGFFLCTRESWLHVIQQLEEAEISCALQSDLVKPVYTFNSLKGQDRFDVLYSQSDADQYTLVFANCLQQLKVSMGVRSAMYNLEGKSGRRDYLSAGKTILPRIYFIFSMIYFLLAIVWIHVLYKKRSTVYGIHFFMLAVVILKALNLICEAEDKSYIKRTGSAHGWDILFYIFSFLKGITLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVTDETGPFEQEWVTWKQVFLLVDVICCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRQYYIVVICYIYFTRVVVYALETITSYRYLWTSVVAGELATFAFYAFTGYKFKPEAHNPYFVVDDEEEEAAAEALKLEDEFEL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9915514 9916821 + Carg19479-RA Car16g01162 164314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01162 435 Pfam Lung seven transmembrane receptor 127 411 IPR009637 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01162 K22985 GPR107; G protein-coupled receptor 107 - csv:101214894 773.852
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00515 Car16g01162 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00400 Car-Chr3:4709822 Car16g01162 Car-Chr16:9915514 1.23E-159 dispersed
Car07g00942 Car-Chr7:5286578 Car16g01162 Car-Chr16:9915514 4.77E-160 dispersed
Car16g01162 Car-Chr16:9915514 Car06g00515 Car-Chr6:2890989 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g247 . . . . . . . . Cmo06g00585 Cmo16g01281 . . . . . Cpe14g01020 . . . . . . . . Cla10g00080 Cam10g0077 Cec10g0080 Cco10g0084 Clacu10g0078 Cmu10g0925 Cre10g0341 . . . . Lsi07g01107 . . Cme06g02386 . . . . . . . . . . . Cma06g00581 Cma16g01233 Car06g00515 Car16g01162 Cpe08g00918 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013093 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01162 Car_Chr16 FPKM 3367.578369 3443.318359 21.335314 23.294641 0.084491 0.051727 0.158755 1.918877 0.793503 0.489109
Car16g01162 Car_Chr16 FPKM 3195.010498 3409.490967 24.527311 23.656424 0.084491 0.146786 0.123085 2.025532 0.97813 0.605913