Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car16g01168 | ATGGCTTCCATTTCTCCTCCTCTCCTTCCCTTCTTCTTCCTCTTCTTCTTCTCTTCTGTAAATTCAGCTACTTTCACCATTTTAAACCAATGTGGTTACCCAATTTGGCCCGGAGTTTTGTCGGGCGCTGGCACCTCACAACTTTCGACCACCGGTTTCGTCCTGCAGCCGGGACAGTCCAACGCCCTCACCATGCCTCCGTCGTGGTCTGGCCGGATCTGGGGTCGCACTTATTGCTCCCAAGACAATGCTGGTAGATTCTCCTGTGCCACTGCCGACTGCGGCTCGGGCACCGTCGAATGCAATGGTAGTGGCGCTGCCCCGCCTGCTACCCTTGCTGAGTTCACGCTCAACGGTGCTGGTGGACTTGATTTCTATGATGTTAGCCTCGTCGATGGCTATAATGTACCCATGTTAATCACCCCACAAGCTAGCTCAGCAAATTTAAACACGGAGTGTCCAATGGAGCTAAGAGTGGCAGTGGATGGGCAGAGTGTGGCGTGCAAGAGCGCATGTGGGGCGTTTGGTGAGCCGCAATATTGCTGCAATGGCGAATATGGGAGCCCAAGCACTTGTCGACCCACGTCTTACTCAGAGTTCTTCAAGTCGGCATGTCCGCAAGCTTATAGTTATGCCTATGATGATGGAACTAGCACCTTCACTTGCGCCGCCGCCAATTACCTCATCACTTTCTGTCCTTCTCTTTCAACTAGGTAA | 717 | 52.58 | MASISPPLLPFFFLFFFSSVNSATFTILNQCGYPIWPGVLSGAGTSQLSTTGFVLQPGQSNALTMPPSWSGRIWGRTYCSQDNAGRFSCATADCGSGTVECNGSGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNVPMLITPQASSANLNTECPMELRVAVDGQSVACKSACGAFGEPQYCCNGEYGSPSTCRPTSYSEFFKSACPQAYSYAYDDGTSTFTCAAANYLITFCPSLSTR | 238 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 9936919 | 9937748 | + | Carg19473-RA | Car16g01168 | 164320 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car16g01168 | 238 | ProSitePatterns | Thaumatin family signature. | 85 | 101 | IPR017949 | - | |
| Car16g01168 | 238 | Pfam | Thaumatin family | 29 | 233 | IPR001938 | - | |
| Car16g01168 | 238 | ProSiteProfiles | Thaumatin family profile. | 22 | 233 | IPR001938 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00259 | Car-Chr5:1442406 | Car16g01168 | Car-Chr16:9936919 | 3.88E-97 | dispersed | |
| Car16g01168 | Car-Chr16:9936919 | Car20g00665 | Car-Chr20:3747654 | 6.14E-58 | dispersed | |
| Car01g01550 | Car-Chr1:12961740 | Car16g01168 | Car-Chr16:9936919 | 3.91E-74 | wgd | |
| Car16g01168 | Car-Chr16:9936919 | Car03g00627 | Car-Chr3:5720392 | 2.95E-89 | wgd | |
| Car16g01168 | Car-Chr16:9936919 | Car06g00510 | Car-Chr6:2862907 | 9.41E-87 | wgd | |
| Car16g01168 | Car-Chr16:9936919 | Car07g00370 | Car-Chr7:1850908 | 5.01E-67 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car16g01168 | - | - | csv:101216818 | 401.364 |