Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01173 ATGGCAGAAGAGGATACCCCCTCTGAACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTCTCACCTCTACAATGTCCACTCCATTGCGGAAGGTGTTCTGTAGAATTTCAGGTCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGCCGAAGAATCTTTCACAGAGATGTTGAACAACAGGAGTTTCAATATGCAAGCTCTCATTGCCTTTCTTCTTATTACAGTGTCTTTGTTGCTCGCCTTGCTATAATGGTGATGCTAGCTATTTTGATTGGGATGCTGACAATACTCACATGGCACTTCACAAAGAGCTACACGGCACAGTCGCTCGATAGCTTAGCGTATGGTCTTCGACATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTTTCAGAATATGTAATGAGGAAGTACAGCAAGCCAGTGAATCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAGAGACGTTACGTGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACGATCAATTACAAGAATGGTTTTGTCCAAGCGTTCCATCGAGATCATAGAAGCAACAATACGTTTTATATTTACTCGGATCTTGCAAACTATTCCATCACTGCCACTCAGTCATATAATATAAATCGACTTTCGTCGGGTGAAGGGTGGTCGGAACCACCCATACATGGCAATGTTTCTGCCAAATGGTACCGGGAACCGCTTGATCCGATTAGTGGTGAGAAGATGGGGAAAGCAAGACAAATCCCACCGGAGGACTTGATTAACATTCCTGGCATTTCACAGGTAGCTGATGGTGTTGCGTCATGGCATGTTACTGTCAGCAAGTACATGGATACACCATTGCTTTCAGCAGCCCTGCCTGTTTCGGATGCTTCAAATGAAAGCATAGTTGCGGTGGTCGGTGTCACGACCGCACTTTCGAGCGTCGGTCAACTTATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCTTGTTAAGAAATACATCGACGGGTCGGAAGCTTATGATGGCTGTCGATTCCCAAGATGACGTGATTCGATTAGGAGCCGAATGGTTAAACAAAACCTATGGAAATAACTTTCCTCCTGGTCATGAGGTCCATGAAGAGAACGTCAAGCTTGGTGGTCAGCAGTACTACATCGACTCGTTTTTTCTTAATCTAAAGAAGCTTCCCATTGTGGGGGTTGTCATCATTCCTAGGCAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTTATACTCATTTCTGCCTCTTTGTGCATCTTAGTTGTTGGATGTCTATTCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGAGCTGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCTGAGGCATCTAGTAATTACAAGAGTCAGTTTCTAGCGAATATGAGTCATGAGCTGAGGACACCGATGGCTGCGGTAATTGGACTGCTCGACATTCTAATGTGCGATGACTGTCTCAATAACGAACAGTTTGCGACAGTCACTCAGATTCGAAAATGCTCAACAGCTCTACTCAGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTAGTTTTGGAAGATGCAGAGTTTGATCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTTTCCGTGCAATGCATTGATCATAATGTGGAAACTGTATTGGATCTCTCTGATGATATGCCGAGATTAGTTCGAGGAGACTCCGGTCGGGTTGTTCAAATATTCACGAACTTGATTAGCAACTCTATCAAATTCACTACTACTGGTCACATCATTCTTCGAGGGTGGTGCGAGACGTCGAATACGCTCAAAGAAATGGGAAAGTCTTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACACGGAGACCACATGAAGAACGCGTTCAAGAAAGATAACAAAATGACCTTATGGTTTGAACTTGATGACACTGGCTGTGGGATCGATCCTAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCACGGTGGCACGGGTCTTGGACTATGCATCGTTCGTACCTTGGTTAACAAGATGGGTGGTGAAATCAAGGTTGTAAAGAAAAACGGCCCGGGAACGCTAATGAGACTTTATTTGGTTCTCAGCACACCTGTAGACTCCATAGATCATCACTCTCAGTTTGATTTCGCAAAACATAATGCAGTGGTACTTCTTGCACTCCGTGGCAGCACGAGTCGATTAATCACGTCGCAGTGGCTTCGTAAGATCGGACTGTTCACTTTAGAGGCTTCAGAATGGAATGAACTAACTCTAATCCTTCAAGAACTCTTTCAAGCCAGAAAGTTTGAAAACAAAAAGGGATTTAGTCCACAGGATTCCCTCGGTGAACCATTACGAGCCGAGTTAACGAGAATTAAGGACATGAAAAGCCAAATGTTCATCGTCGTTGCCGATATCGGGATACTGGACTTGAGCACAGATATTTGGAAGGATCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGTGAAGTTTGCGTGGATGTTAAACCACGATACGTCCAACGCCATGAAGACGGAGCTTCGGGGAAAAGGACACTTTATAGTGAACAATAAGCCGCTGTATAGAGCAAAAATGATTCATATTTTGGAAGCTGTTATGAAAGACAGAAATCTTGAGATTCAGAGGAAAAATGGTTTAAGAAATGCATCAAAAGAAGGGGATTTTCATGAATGCCTTGAAATTGATTCGACTCAGTTTGAAACTGCTAGCTCTGATGATTCTGATTTAGCTGAGTCCAAGTCTCAGTGTGCGACATTTCAAGAAGAAACAATGCCAAAACCTTGTCAGCCGCCATTTTTGTCCCTTAACGATAGCTTAGTTGAGTTAACTCCTGTACGTTCGACTGCGAGTAACGCAAGGACCCGTGGTTCATGTGACATGAGACAAGACTCGTCCCATGGACTGAACTTAGGAGGAAACTATCCTAAAAGCCAAGAAGAATCAGCTTCTAAGAATGTTCATGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTTCAAAGAGTAACGACGATAATGCTCGAAAGAATGGGAGCCACGGTGATCCCTGTCGGAGATGGGCTGCTGGCTGTTGAAGCTCTGACTGCAATGCTTAGTGCTGAAGAGCAAAGAAGAGAATGCCCCACGAGATATGATTTGGTCTTGATGGATTGCCAAATGCCAAAGATGGACGGCTACGAAGCAACAAAAGCGATTAGAAAGCTAGAATTAGGAACGAGCCTTCACGTACCGATCGTAGCATTGACAGCCCACGCGATGTCGTCGGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTCTCCCTCACTCAGAGAAAAGTCTAA 3630 43.88 MAEEDTPSEPSSSSSSSSSSSALTSTMSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGMLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSITATQSYNINRLSSGEGWSEPPIHGNVSAKWYREPLDPISGEKMGKARQIPPEDLINIPGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSTGRKLMMAVDSQDDVIRLGAEWLNKTYGNNFPPGHEVHEENVKLGGQQYYIDSFFLNLKKLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVVGCLFILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCIDHNVETVLDLSDDMPRLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKSCMDQKKSRFPNRTKMKQHGDHMKNAFKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSIDHHSQFDFAKHNAVVLLALRGSTSRLITSQWLRKIGLFTLEASEWNELTLILQELFQARKFENKKGFSPQDSLGEPLRAELTRIKDMKSQMFIVVADIGILDLSTDIWKDQLYFLDKYSGKVKFAWMLNHDTSNAMKTELRGKGHFIVNNKPLYRAKMIHILEAVMKDRNLEIQRKNGLRNASKEGDFHECLEIDSTQFETASSDDSDLAESKSQCATFQEETMPKPCQPPFLSLNDSLVELTPVRSTASNARTRGSCDMRQDSSHGLNLGGNYPKSQEESASKNVHGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIPVGDGLLAVEALTAMLSAEEQRRECPTRYDLVLMDCQMPKMDGYEATKAIRKLELGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRKV 1209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9965169 9971266 + Carg19468-RA Car16g01173 164325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01173 1209 MobiDBLite consensus disorder prediction 1 25 - -
Car16g01173 1209 MobiDBLite consensus disorder prediction 1026 1060 - -
Car16g01173 1209 MobiDBLite consensus disorder prediction 1026 1066 - -
Car16g01173 1209 ProSiteProfiles Response regulatory domain profile. 1075 1205 IPR001789 GO:0000160
Car16g01173 1209 ProSiteProfiles Histidine kinase domain profile. 516 774 IPR005467 -
Car16g01173 1209 Pfam His Kinase A (phospho-acceptor) domain 510 575 IPR003661 GO:0000155|GO:0007165
Car16g01173 1209 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 622 772 IPR003594 -
Car16g01173 1209 Pfam Response regulator receiver domain 1076 1199 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00983 Car-Chr12:9906293 Car16g01173 Car-Chr16:9965169 3.56E-26 dispersed
Car16g01173 Car-Chr16:9965169 Car20g00576 Car-Chr20:3233680 1.79E-15 dispersed
Car16g01173 Car-Chr16:9965169 Car06g00101 Car-Chr6:666546 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5004 PF02518 HATPase_c 6.80E-23 CL0025 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01173 - - csv:101217761 2145.55