Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car16g01184 | ATGGGAAACTCTACGCTTGCGAATCTTGGCGACTCCCGAGCTGTGTTGGGTAGGCTTGTTCGGTCGACGGGGGAAGTTCTTCCTATTCAGCTGTCGTCGGAGCACAATGTAAGCATACAATCAGTCCGCCAGGAGATGCAGTCTATGCACCCAGATGACTCCCAGATAGTAGTGTTGAAGCATAACGTATGGCGCGTAAAGGGCTTGATTCAGATTTCTCGGTCGATTGGAGACGTATATCTCAAAAAGCCAGAGTTTAACCGGGAGCCTTTGTATACTAAGTTTCGTCTCCGAGAGCCCTTCAGTAAGCCTATTCTGAGCTCAGAACCTGCTGTCTCTGTGCATGAACTCGATCCAGACGATCAATTTCTCATATTTGCCTCTGATGGGCTGTGGGAGCACCTAAGCAACCAGGATGCAGTTGATATAGTTCACAAGCATCCTCACGGTGGAAGTGCAAGGAGGCTGGTGAAGGCGGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCAGACTTGAAGAAGATCGATCGTGGGGTTCGGCGTCATTTTCACGATGACACAACGGTGATAGTCGTGTTTGTGGGTTCAAGCAGAGGGGAAAGAAGCCCTGTTTTGTCTGTGAGAGGGGGAGGAGTGAAGGTATATGCGAAGTCAGGGCTGAACACTGCCCCTTCGTAA | 687 | 49.93 | MGNSTLANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSMHPDDSQIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYTKFRLREPFSKPILSSEPAVSVHELDPDDQFLIFASDGLWEHLSNQDAVDIVHKHPHGGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFVGSSRGERSPVLSVRGGGVKVYAKSGLNTAPS | 228 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 10034965 | 10036423 | + | Carg19457-RA | Car16g01184 | 164336 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car16g01184 | 228 | Pfam | Protein phosphatase 2C | 6 | 167 | IPR001932 | - | |
| Car16g01184 | 228 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 197 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car16g01184 | Car-Chr16:10034965 | Car16g00633 | Car-Chr16:4034763 | 1.15E-119 | dispersed | |
| Car16g01184 | Car-Chr16:10034965 | Car03g00605 | Car-Chr3:5617688 | 1.67E-118 | wgd | |
| Car16g01184 | Car-Chr16:10034965 | Car06g00111 | Car-Chr6:720813 | 1.20E-137 | wgd | |
| Car16g01184 | Car-Chr16:10034965 | Car07g00353 | Car-Chr7:1775218 | 1.56E-119 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car16g01184 | K01102 | - | csv:101220137 | 404.06 |