Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car16g01199 | ATGATGGAGTGGGAAAAGGCTGAGCACCAAACTCCGTACCACCACCAGAACCCTCCTCTTCGAGACGATCACCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACACTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAACATGTACTGTGAGCCACTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCAACGCCTGTGCAACTTCAGATCTTGGAGCGCATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAGAAGATCAAAGAGATCACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGCACAGCACCCGCCTATGGCGAATCAGAAGTAGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGGGATGACATGTGCTTCCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTTCAAATGGAAGTTTAAAAACTGCAAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGAAACGAGCAGCTGACAGGAAAGATTGAAACGCCAGATAACTACAGTCTTTACCAGCAAGCGGAAGGCTACAGCATGACCGAACGACCCTGA | 837 | 48.51 | MMEWEKAEHQTPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQTSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFSNGSLKTARSFSQMSFYEAGNEQLTGKIETPDNYSLYQQAEGYSMTERP | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 10130838 | 10132650 | - | Carg19441-RA | Car16g01199 | 164351 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car16g01199 | 278 | Pfam | Homeodomain | 100 | 160 | IPR001356 | GO:0003677 | |
Car16g01199 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 96 | 161 | IPR001356 | GO:0003677 | |
Car16g01199 | 278 | MobiDBLite | consensus disorder prediction | 175 | 189 | - | - | |
Car16g01199 | 278 | MobiDBLite | consensus disorder prediction | 158 | 189 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car09g00039 | Car-Chr9:199267 | Car16g01199 | Car-Chr16:10130838 | 6.40E-89 | dispersed | |
Car16g01199 | Car-Chr16:10130838 | Car11g00287 | Car-Chr11:1565333 | 1.41E-15 | dispersed | |
Car01g01590 | Car-Chr1:13151809 | Car16g01199 | Car-Chr16:10130838 | 9.60E-90 | wgd | |
Car16g01199 | Car-Chr16:10130838 | Car06g00127 | Car-Chr6:791500 | 9.77E-180 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5006 | PF00046 | Homeodomain | 8.90E-19 | CL0123 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car16g01199 | - | - | csv:101203410 | 531.561 |