Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01199 ATGATGGAGTGGGAAAAGGCTGAGCACCAAACTCCGTACCACCACCAGAACCCTCCTCTTCGAGACGATCACCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACACTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAACATGTACTGTGAGCCACTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCAACGCCTGTGCAACTTCAGATCTTGGAGCGCATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAGAAGATCAAAGAGATCACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGCACAGCACCCGCCTATGGCGAATCAGAAGTAGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGGGATGACATGTGCTTCCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTTCAAATGGAAGTTTAAAAACTGCAAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGAAACGAGCAGCTGACAGGAAAGATTGAAACGCCAGATAACTACAGTCTTTACCAGCAAGCGGAAGGCTACAGCATGACCGAACGACCCTGA 837 48.51 MMEWEKAEHQTPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQTSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFSNGSLKTARSFSQMSFYEAGNEQLTGKIETPDNYSLYQQAEGYSMTERP 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 10130838 10132650 - Carg19441-RA Car16g01199 164351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01199 278 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Car16g01199 278 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Car16g01199 278 MobiDBLite consensus disorder prediction 175 189 - -
Car16g01199 278 MobiDBLite consensus disorder prediction 158 189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00039 Car-Chr9:199267 Car16g01199 Car-Chr16:10130838 6.40E-89 dispersed
Car16g01199 Car-Chr16:10130838 Car11g00287 Car-Chr11:1565333 1.41E-15 dispersed
Car01g01590 Car-Chr1:13151809 Car16g01199 Car-Chr16:10130838 9.60E-90 wgd
Car16g01199 Car-Chr16:10130838 Car06g00127 Car-Chr6:791500 9.77E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5006 PF00046 Homeodomain 8.90E-19 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01199 - - csv:101203410 531.561