Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01199 ATGATGGAGTGGGAAAAGGCTGAGCACCAAACTCCGTACCACCACCAGAACCCTCCTCTTCGAGACGATCACCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACACTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAACATGTACTGTGAGCCACTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCAACGCCTGTGCAACTTCAGATCTTGGAGCGCATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAGAAGATCAAAGAGATCACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGCACAGCACCCGCCTATGGCGAATCAGAAGTAGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGGGATGACATGTGCTTCCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTTCAAATGGAAGTTTAAAAACTGCAAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGAAACGAGCAGCTGACAGGAAAGATTGAAACGCCAGATAACTACAGTCTTTACCAGCAAGCGGAAGGCTACAGCATGACCGAACGACCCTGA 837 48.51 MMEWEKAEHQTPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQTSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFSNGSLKTARSFSQMSFYEAGNEQLTGKIETPDNYSLYQQAEGYSMTERP 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 10130838 10132650 - Carg19441-RA Car16g01199 164351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01199 278 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Car16g01199 278 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Car16g01199 278 MobiDBLite consensus disorder prediction 175 189 - -
Car16g01199 278 MobiDBLite consensus disorder prediction 158 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01199 - - - csv:101203410 531.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00039 Car-Chr9:199267 Car16g01199 Car-Chr16:10130838 6.40E-89 dispersed
Car16g01199 Car-Chr16:10130838 Car11g00287 Car-Chr11:1565333 1.41E-15 dispersed
Car01g01590 Car-Chr1:13151809 Car16g01199 Car-Chr16:10130838 9.60E-90 wgd
Car16g01199 Car-Chr16:10130838 Car06g00127 Car-Chr6:791500 9.77E-180 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car06g00058 . 4 252 Wox Gene Family AT3G03660 52.5 4.1e-53 205.7
Car14g00419 . 14 245 Wox Gene Family AT3G03660 50.4 9.2e-45 177.9
Car16g01199 . 1 275 Wox Gene Family AT4G35550 51.0 3.9e-71 265.4
Car06g00127 . 26 263 Wox Gene Family AT4G35550 53.7 5.0e-66 248.4
Car09g00039 CCT 1 191 Wox Gene Family AT4G35550 60.5 1.8e-55 213.4
Car01g01590 CCT 1 162 Wox Gene Family AT4G35550 67.5 1.2e-54 210.7
Car06g00127 . 26 165 Wox Gene Family AT1G20700 55.9 3.0e-39 159.1
Car01g01590 CCT 38 169 Wox Gene Family AT1G20700 58.5 8.8e-39 157.5
Car05g00145 CCT 5 170 Wox Gene Family AT1G46480 60.9 7.4e-48 187.6
Car12g00518 CCT 1 134 Wox Gene Family AT1G46480 62.8 1.5e-43 173.3
Car12g00523 . 5 138 Wox Gene Family AT1G46480 61.3 7.2e-43 171.0
Car07g00176 CST 1 392 Wox Gene Family AT2G33880 50.2 1.8e-64 243.8
Car05g00145 CCT 5 170 Wox Gene Family AT1G46480 60.9 7.4e-48 187.6
Car12g00518 CCT 1 134 Wox Gene Family AT1G46480 62.8 1.5e-43 173.3
Car12g00523 . 5 138 Wox Gene Family AT1G46480 61.3 7.2e-43 171.0
Car07g00176 CST 1 392 Wox Gene Family AT2G33880 50.2 1.8e-64 243.8
Car06g00058 . 4 252 Wox Gene Family AT3G03660 52.5 4.1e-53 205.7
Car14g00419 . 14 245 Wox Gene Family AT3G03660 50.4 9.2e-45 177.9
Car16g01199 . 1 275 Wox Gene Family AT4G35550 51.0 3.9e-71 265.4
Car06g00127 . 26 263 Wox Gene Family AT4G35550 53.7 5.0e-66 248.4
Car09g00039 CCT 1 191 Wox Gene Family AT4G35550 60.5 1.8e-55 213.4
Car01g01590 CCT 1 162 Wox Gene Family AT4G35550 67.5 1.2e-54 210.7
Car06g00127 . 26 165 Wox Gene Family AT1G20700 55.9 3.0e-39 159.1
Car01g01590 CCT 38 169 Wox Gene Family AT1G20700 58.5 8.8e-39 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5006 PF00046 Homeodomain 8.90E-19 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01199 Car_Chr16 FPKM 20.195173 16.587744 17.89843 17.073786 40.346512 40.634731 40.947014 13.165449 14.172172 14.754538