Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01214 ATGTGTGATGCAAAGGAGAAACAGGAATCTGCACAGGATGTTCCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGGGAAAGATGAGCTCCATGATTCTTTCTGTGTGACAGCTGAGGCAACTCCCAACTCATGTGAAAAAGAGATTGACTCACCTGAGACTCTTGTCAAAACTGGCCCTGATGAGTTGCCCCCAAGGGAGTTGGGTTTAGATGCTGCTACTTCCAACTCTCACATAGAAACTGTCCAGCCCTCCATGGATGCCAAATCTGAGGCCTTTGAGATGTCTGAAACTAAAACTGGTTCTCTTGATCATGCTTTAATAGCAAATCATGATGAACCTGTAACTCCCTGTCCAGTGCCATCTTGTATTAAAGTGGAAACAGAAAATGCCATAGGGTTGAAGCTCAATGAAGACAGTGTTACTACACCTCATAATGGGCATACAAATATGAGTCACTCGTTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCCGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGACCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAGTTCAAACCTCCCAAGTTCTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTGACTCGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCCATGGTGGTGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGACCAGGATCAGGTAGAGCACGTAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGCAAGAAATCATCTTACATGGAGCATGCCATGAAATCAGCACGTACAAAATCACCCAAACCACAGCTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTTCGTGAGGAGGTGCGTGTTCAGTCTGATCCGACGGGACGCTTGGTAATTAGCGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCGAGGATTGATCCACATCAGACTTCTGCCGTTGTCACTTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1395 44.59 MCDAKEKQESAQDVPVALSEGNQVNGKDELHDSFCVTAEATPNSCEKEIDSPETLVKTGPDELPPRELGLDAATSNSHIETVQPSMDAKSEAFEMSETKTGSLDHALIANHDEPVTPCPVPSCIKVETENAIGLKLNEDSVTTPHNGHTNMSHSFILDENHIAEGSESGTEEEQSAFMKDLENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELSVPIASNSEPMSIENQGPGSGRARRDAAARAMQGWHSRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKSSYMEHAMKSARTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPTGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 10219954 10225608 - Carg19426-RA Car16g01214 164366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01214 464 MobiDBLite consensus disorder prediction 1 27 - -
Car16g01214 464 MobiDBLite consensus disorder prediction 269 292 - -
Car16g01214 464 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 364 464 IPR002068 -
Car16g01214 464 ProSiteProfiles ARID domain profile. 171 262 IPR001606 GO:0003677
Car16g01214 464 Pfam ARID/BRIGHT DNA binding domain 174 258 IPR001606 GO:0003677
Car16g01214 464 Pfam Hsp20/alpha crystallin family 381 461 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01214 - - - cmax:111465194 889.797
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01610 Car-Chr1:13223074 Car16g01214 Car-Chr16:10219954 2.66E-68 wgd
Car16g01214 Car-Chr16:10219954 Car06g00146 Car-Chr6:888062 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00085 . 1 326 ARID Transcription Factor Family AT1G04880 53.0 9.5e-94 341.3
Car08g00902 . 45 344 ARID Transcription Factor Family AT1G04880 52.0 7.8e-80 295.0
Car16g01214 . 163 432 ARID Transcription Factor Family AT1G20910 59.6 1.5e-87 320.5
Car06g00146 . 206 483 ARID Transcription Factor Family AT1G20910 54.2 4.6e-76 282.3
Car09g00069 CCT 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.1e-113 407.1
Car01g01565 CCT 16 326 ARID Transcription Factor Family AT1G76110 63.9 2.4e-110 396.0
Car16g01214 . 154 462 ARID Transcription Factor Family AT1G76510 61.0 4.7e-106 382.1
Car06g00146 . 197 513 ARID Transcription Factor Family AT1G76510 56.8 1.3e-95 347.4
Car01g01610 . 5 218 ARID Transcription Factor Family AT1G76510 51.5 3.1e-73 273.1
Car14g01069 CCT,ECH 1 781 ARID Transcription Factor Family AT3G43240 58.3 6.3e-260 894.0
Car01g00013 . 1 778 ARID Transcription Factor Family AT3G43240 58.7 1.0e-257 886.7
Car17g00618 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.7 4.0e-254 874.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5009 PF00011 HSP20 5.60E-06 CL0190 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g01214 Car_Chr16 FPKM 23.4 28.98501 57.212215 57.966156 29.331354 27.319292 29.546507 59.256184 57.93029 55.022144