Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g01214 ATGTGTGATGCAAAGGAGAAACAGGAATCTGCACAGGATGTTCCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGGGAAAGATGAGCTCCATGATTCTTTCTGTGTGACAGCTGAGGCAACTCCCAACTCATGTGAAAAAGAGATTGACTCACCTGAGACTCTTGTCAAAACTGGCCCTGATGAGTTGCCCCCAAGGGAGTTGGGTTTAGATGCTGCTACTTCCAACTCTCACATAGAAACTGTCCAGCCCTCCATGGATGCCAAATCTGAGGCCTTTGAGATGTCTGAAACTAAAACTGGTTCTCTTGATCATGCTTTAATAGCAAATCATGATGAACCTGTAACTCCCTGTCCAGTGCCATCTTGTATTAAAGTGGAAACAGAAAATGCCATAGGGTTGAAGCTCAATGAAGACAGTGTTACTACACCTCATAATGGGCATACAAATATGAGTCACTCGTTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCCGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGACCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAGTTCAAACCTCCCAAGTTCTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTGACTCGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCCATGGTGGTGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGACCAGGATCAGGTAGAGCACGTAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGCAAGAAATCATCTTACATGGAGCATGCCATGAAATCAGCACGTACAAAATCACCCAAACCACAGCTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTTCGTGAGGAGGTGCGTGTTCAGTCTGATCCGACGGGACGCTTGGTAATTAGCGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCGAGGATTGATCCACATCAGACTTCTGCCGTTGTCACTTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1395 44.59 MCDAKEKQESAQDVPVALSEGNQVNGKDELHDSFCVTAEATPNSCEKEIDSPETLVKTGPDELPPRELGLDAATSNSHIETVQPSMDAKSEAFEMSETKTGSLDHALIANHDEPVTPCPVPSCIKVETENAIGLKLNEDSVTTPHNGHTNMSHSFILDENHIAEGSESGTEEEQSAFMKDLENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELSVPIASNSEPMSIENQGPGSGRARRDAAARAMQGWHSRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKSSYMEHAMKSARTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPTGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 10219954 10225608 - Carg19426-RA Car16g01214 164366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g01214 464 MobiDBLite consensus disorder prediction 1 27 - -
Car16g01214 464 MobiDBLite consensus disorder prediction 269 292 - -
Car16g01214 464 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 364 464 IPR002068 -
Car16g01214 464 ProSiteProfiles ARID domain profile. 171 262 IPR001606 GO:0003677
Car16g01214 464 Pfam ARID/BRIGHT DNA binding domain 174 258 IPR001606 GO:0003677
Car16g01214 464 Pfam Hsp20/alpha crystallin family 381 461 IPR002068 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01610 Car-Chr1:13223074 Car16g01214 Car-Chr16:10219954 2.66E-68 wgd
Car16g01214 Car-Chr16:10219954 Car06g00146 Car-Chr6:888062 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5009 PF00011 HSP20 5.60E-06 CL0190 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g01214 - - cmax:111465194 889.797