Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00003 ATGGACAATTACGGTTCTTCCCCTTCATATCCATACCACCATCCATATGCATACCCTCGTCCAGTTCCTCCTCAATACCCACCGCCTCCTCAATATCCACCTCCTCCTCAACATCCACCTCCTCCTCATTATACGCATCCAAATTCAGATCCATATGCTCGTCCTCCGTACCCTTACCCGTATGATCCTTCACATGCCTCTGTATTTGCATATCCCCCACCCCCATCTCATTCTGCCCAAGTAGAGTATTTTCAACATCCACCTCCACATTCTGGGCCTGTACCTTCCCCATATTCTTACGGTGACGCCTCTTATACTAATGATAGTGCCAGGCCATCCATTCAATATCATAACAATTTCCAACCTGGTACATCCCCATATCGGTATGAAGAATCTAGTACATACCCTCCCCCAGAAACTCAATACCCACCACCCCCTTCGCGAGTAAATAACTCCTCTGGCCACTATGATAGCACTGATTCGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTTCAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAACCTGGTACATACCCTCCCTCAGAAAGTCAATACCCACCACCCCCTTCACGAGCAAATAGCTTCTCTGGCCACTATAATGGCACTGATTCCTCATCGCCTGTCTCTTATGCATACCCGCCTCTGGATGACCTTTTGGGTAATGTACATTTGTCTGATCATCAACCTACTTCTCCTGCATCACCTTCAGTGCCTGCACAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTATAAGATATGATCGGCGTGACCGATTTTATGGCTTTCCTAATTCATCATTTTCTAGTTTCGATACGGGGAATTCATATCAAATGGCTTCATCCAACCAACCTTCATTTTCCCATTCAAGCTCATTTGGTGGGTCTCAACATAGTCAGAACTTGCAGATTGTTCCATTGCACAGTAAAGCATCATTGAAGGTTTTGCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAATATGGACATGTTTCACAAGACCTTGGGGGATATGTTTGCAAAATTACCTGGGAATATGAGCAACAAAGTTGAAGGACATGTGAGTCATAAGATCACTAGTGATCCTTATGTTTCGATCTATGTAGCAAATGCAGTAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAATCCTGAATGGAGGCAGCATTTCTATGTTCCCGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGTGATGTTGTTGGTTCGCAGCTAATAGGAACTGTAACAATTCCTGCAGAACAAATATATGCAGGGTCTGTAGTTGAGGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAGCCTGGAGCTGCTCTAACTATTTCTATTCAATATACCCCAATGGACAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTACCAGGGGGTTCCTGATACATATTTCCCCCTCAGAAAGGGTGGAGCTGTCACTCTGTACCAAGATGCCCATGTTCCAGATGGACACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTATATAACTGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGGGACAGAGTGTACCCTTGGAGATCTCCTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGATATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGATTTTTCAAACAATCCTCTGTACAAGTGATACTTTGTCCTCGGATGGCTGGAAAACGACATAGCTGGGTTAAGCAAAAGGAAGTTGGAACTATCTATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGGCTCGATTTATGTGACGGGCGGTATGATAATCCATCACATCCCATATTTCGGACACTTCAAACAGTACACAAGGATGATTACCACAATCCTACATACACGGGTAGTACTGTTGGTTGTCCAAGAGAACCGTGGCATGATCTGCACAGCAAAATTGAAGGTCCAGCAGCATATGATGTTTTGACCAATTTTGAGGAGCGATGGAGGAGAGCTTCAAAACCTCACGGGATAAAAAAGTTGAAATCATATGATGATGCTTTGCTGCGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCGTACTGTAACTATGAAAATGATCCTGAATCATGGCATGTGCAGATTTTTCGTTCAATTGATTCAAGTTCTGTTAAAGATTTCCCGAAGGACCCAAAAGATGCCCCAAGCAAGAACCTCGTATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACAGCATACGTGAAAGCCATTCGAGCTGCCCAACACTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATTCAAACAAAGATATAGGTGCCAACAATTTGATTCCAATGGAAATTGCGCTAAAGATTGCTGATAAAATCAGAGGAAATGAGAGGTTTGCTGCATATATTGTCATCCCCATGTGGCCTGAGGGCGTCCCAACTGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCATTTACAAGGCCTTGATGGAGGTTGGTCTTGAGGAGGCATTCTCTCCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGATGTGGATGGAAATGATCCTTTATCTTCTGGAAGCCCTAGTGCAGAAAACTCTCCTCAGGCACTTAGTCGGAAAAGCAGAAGATTTATGATATATGTTCACTCCAAAGGCATGATAGTTGATGACGAGTATGTGATTTTGGGATCTGCTAACATCAACCAAAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGATCCTATCAACCTCATTATACATGGGCAAAGAAGCGTTCACGTCCTCGTGGACAGATCTATGGATATAGGATGTCGTTGTGGGCGGAGCATACAGGAACGATGGAAGAGTGTTTCAATGAACCGGAGAGCCTGGAATGCGTGAGAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGAAGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCTGTTGAAGTTGATAGAAGAGGGAGAGTAAAATCCCTTCCTGGACATGAAAATTTTCCAGACGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGGATTCAGGAGAACCTCACTATCTAA 3438 42.99 MDNYGSSPSYPYHHPYAYPRPVPPQYPPPPQYPPPPQHPPPPHYTHPNSDPYARPPYPYPYDPSHASVFAYPPPPSHSAQVEYFQHPPPHSGPVPSPYSYGDASYTNDSARPSIQYHNNFQPGTSPYRYEESSTYPPPETQYPPPPSRVNNSSGHYDSTDSPSVSLLSHSPQISRYDRFTSNYKNEEPGTYPPSESQYPPPPSRANSFSGHYNGTDSSSPVSYAYPPLDDLLGNVHLSDHQPTSPASPSVPAQPSVSLLSHSPQIIRYDRRDRFYGFPNSSFSSFDTGNSYQMASSNQPSFSHSSSFGGSQHSQNLQIVPLHSKASLKVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKVEGHVSHKITSDPYVSIYVANAVIGRTFVISNNENPEWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVTIPAEQIYAGSVVEGTFPILLGGKPCKPGAALTISIQYTPMDRLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKQSSVQVILCPRMAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDNPSHPIFRTLQTVHKDDYHNPTYTGSTVGCPREPWHDLHSKIEGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLRIERIHDIIGISEAYCNYENDPESWHVQIFRSIDSSSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRGNERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEEAFSPQDYLNFFCLGNREDVDGNDPLSSGSPSAENSPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGSYQPHYTWAKKRSRPRGQIYGYRMSLWAEHTGTMEECFNEPESLECVRRVRTMGELNWKQFAADEVTEMRGHLLKYPVEVDRRGRVKSLPGHENFPDVGGKIVGSFLGIQENLTI 1145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 17533 27332 + Carg10229-RA Car17g00003 164375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00003 1145 MobiDBLite consensus disorder prediction 201 222 - -
Car17g00003 1145 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 658 693 IPR001736 GO:0003824
Car17g00003 1145 Pfam Phospholipase D C terminal 1065 1135 IPR024632 -
Car17g00003 1145 Pfam Phospholipase D Active site motif 659 693 IPR001736 GO:0003824
Car17g00003 1145 Pfam Phospholipase D Active site motif 992 1018 IPR001736 GO:0003824
Car17g00003 1145 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 991 1018 IPR001736 GO:0003824
Car17g00003 1145 ProSiteProfiles C2 domain profile. 312 458 IPR000008 -
Car17g00003 1145 MobiDBLite consensus disorder prediction 14 70 - -
Car17g00003 1145 MobiDBLite consensus disorder prediction 100 136 - -
Car17g00003 1145 MobiDBLite consensus disorder prediction 1 257 - -
Car17g00003 1145 MobiDBLite consensus disorder prediction 146 192 - -
Car17g00003 1145 MobiDBLite consensus disorder prediction 237 257 - -
Car17g00003 1145 Pfam C2 domain 334 460 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00350 Car-Chr7:1750871 Car17g00003 Car-Chr17:17533 0 dispersed
Car08g00568 Car-Chr8:3743854 Car17g00003 Car-Chr17:17533 0 dispersed
Car06g00647 Car-Chr6:3875202 Car17g00003 Car-Chr17:17533 0 transposed
Car17g00003 Car-Chr17:17533 Car08g00824 Car-Chr8:5496173 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00003 K01115 - csv:101218942 1902.1