Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00004 ATGGCCGATATTCACAAACAAGACCTCGACGACCACCACCACTCTCCGCCCACCCATCTCTCTATCAATAACTCCGACTCCTCTCCAATGAACCTTCTTCCCCTTGCTCCCAAGCGGGAGCATCCCGACAACGACCACGAAACTCAGGTCGTCAAGTTCACGGCAGAGATACCTAAAACGGTCTCGTCTATCCCCCCCAAGAGACCCTCCACCAAGGATCGCCACACCAAGGTCGAGGGCCGAGGCCGGAGAATCCGAATTCCGGCTACCTGTGCGGCGCGTATCTTCCAATTGACTCGTGAGCTCGGCCACAAGTCCGACGGCGAAACCATCCGCTGGCTTCTCGAACGGGCCGAGCCGGCGATCATCGCGGCTACTGGGACTGGTACCGTTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCCACCGATCAATCCGCCAGTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTATGTTGACGTAAATGACGCCGTTTCCGTTTCCGCCTCCGCCTCCGCCTCGAACGGCTGTGTTCAGGCCGCTACCGTTGCCGGTTCCCCCGCCGTCCAACAGCCTTTTCCACCGGGGTTTGTTCCAGTGTGGGCCATCCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTGGATTGCTCTTCCACCCGTCCGCAGTTTTTCTCATTCCCGACCCCGGCAGCGCCGCTCATCAACACAACGGCCCGACCCATTTCCACCGTCCCGTCGAAGCTGCACACATCTCACATTCAAGCAAACACCACCAATCAAAGCTCGAGCACTTCAAACTCCTCCGCTTCCAAGTCTGAATCCGTCATGGCGCCGATCTCGAGCTCCACCGTCACGACAAACGGCAAAACTACGAAACAGATGCTCAGAGAATTCTCATTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGCTCGTCGGAAAGAATGAAGACAGAATAG 1026 56.14 MADIHKQDLDDHHHSPPTHLSINNSDSSPMNLLPLAPKREHPDNDHETQVVKFTAEIPKTVSSIPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTSSSNQDSTDQSASKKRRKRPANSDYVDVNDAVSVSASASASNGCVQAATVAGSPAVQQPFPPGFVPVWAIPSNAIIPGAVFMVPSVDCSSTRPQFFSFPTPAAPLINTTARPISTVPSKLHTSHIQANTTNQSSSTSNSSASKSESVMAPISSSTVTTNGKTTKQMLREFSLEIYDKEELQFMSRSSERMKTE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28336 29361 - Carg10228-RA Car17g00004 164376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00004 341 Pfam TCP family transcription factor 70 169 IPR017887 -
Car17g00004 341 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Car17g00004 341 MobiDBLite consensus disorder prediction 61 80 - -
Car17g00004 341 MobiDBLite consensus disorder prediction 158 172 - -
Car17g00004 341 MobiDBLite consensus disorder prediction 144 174 - -
Car17g00004 341 MobiDBLite consensus disorder prediction 1 17 - -
Car17g00004 341 MobiDBLite consensus disorder prediction 266 310 - -
Car17g00004 341 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00004 - - - cmax:111499026 578.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00138 Car-Chr16:779917 Car17g00004 Car-Chr17:28336 9.95E-62 dispersed
Car17g00004 Car-Chr17:28336 Car18g01119 Car-Chr18:11190657 1.07E-55 dispersed
Car17g00004 Car-Chr17:28336 Car08g00823 Car-Chr8:5492001 1.12E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g493 . . . . . . . . . Cmo17g00006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00338 . . Bma02g01049 . . . . . Cma17g00004 . Car17g00004 . Cpe12g00004 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car15g00738 . 31 253 TCP Transcription Factor Family AT5G23280 63.5 1.8e-65 246.5
Car04g02171 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 2.6e-64 242.7
Car04g01351 . 36 250 TCP Transcription Factor Family AT5G23280 61.4 9.7e-64 240.7
Car18g00741 . 33 230 TCP Transcription Factor Family AT5G23280 58.5 9.4e-59 224.2
Car17g00004 . 65 337 TCP Transcription Factor Family AT2G45680 52.2 7.9e-59 224.9
Car18g01068 CCT,ECH 58 148 TCP Transcription Factor Family AT3G47620 92.3 4.5e-41 166.4
Car04g01690 CCT,ECH 62 156 TCP Transcription Factor Family AT3G47620 88.7 5.0e-40 162.9
Car13g00957 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.3e-39 160.2
Car04g01863 . 140 222 TCP Transcription Factor Family AT3G47620 90.4 1.5e-36 151.4
Car04g01863 . 140 232 TCP Transcription Factor Family AT1G69690 82.8 1.7e-36 150.6
Car14g00666 . 1 319 TCP Transcription Factor Family AT3G27010 57.1 5.7e-61 231.9
Car11g01298 . 38 276 TCP Transcription Factor Family AT3G27010 56.7 6.7e-54 208.4
Car17g01312 . 42 259 TCP Transcription Factor Family AT3G27010 53.2 5.5e-48 188.7
Car15g00738 . 1 252 TCP Transcription Factor Family AT5G08330 60.9 2.4e-64 242.7
Car04g02171 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 7.9e-63 237.7
Car04g01351 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 1.3e-60 230.3
Car18g00741 . 10 228 TCP Transcription Factor Family AT5G08330 57.4 3.7e-60 228.8
Car11g00191 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 58.0 4.1e-39 159.5
Car20g00876 . 39 150 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5011 PF03634 TCP 1.90E-30 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car17g00004 Car_Chr17 FPKM 7.825261 12.110723 10.273664 8.779128 12.754475 10.720804 12.773876 13.475287 13.216217 11.983232