Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00004 ATGGCCGATATTCACAAACAAGACCTCGACGACCACCACCACTCTCCGCCCACCCATCTCTCTATCAATAACTCCGACTCCTCTCCAATGAACCTTCTTCCCCTTGCTCCCAAGCGGGAGCATCCCGACAACGACCACGAAACTCAGGTCGTCAAGTTCACGGCAGAGATACCTAAAACGGTCTCGTCTATCCCCCCCAAGAGACCCTCCACCAAGGATCGCCACACCAAGGTCGAGGGCCGAGGCCGGAGAATCCGAATTCCGGCTACCTGTGCGGCGCGTATCTTCCAATTGACTCGTGAGCTCGGCCACAAGTCCGACGGCGAAACCATCCGCTGGCTTCTCGAACGGGCCGAGCCGGCGATCATCGCGGCTACTGGGACTGGTACCGTTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACCACCACTTCCTCTTCTAACCAAGATTCCACCGATCAATCCGCCAGTAAGAAGCGGCGTAAGCGCCCCGCTAACAGTGACTATGTTGACGTAAATGACGCCGTTTCCGTTTCCGCCTCCGCCTCCGCCTCGAACGGCTGTGTTCAGGCCGCTACCGTTGCCGGTTCCCCCGCCGTCCAACAGCCTTTTCCACCGGGGTTTGTTCCAGTGTGGGCCATCCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTGGATTGCTCTTCCACCCGTCCGCAGTTTTTCTCATTCCCGACCCCGGCAGCGCCGCTCATCAACACAACGGCCCGACCCATTTCCACCGTCCCGTCGAAGCTGCACACATCTCACATTCAAGCAAACACCACCAATCAAAGCTCGAGCACTTCAAACTCCTCCGCTTCCAAGTCTGAATCCGTCATGGCGCCGATCTCGAGCTCCACCGTCACGACAAACGGCAAAACTACGAAACAGATGCTCAGAGAATTCTCATTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGCTCGTCGGAAAGAATGAAGACAGAATAG 1026 56.14 MADIHKQDLDDHHHSPPTHLSINNSDSSPMNLLPLAPKREHPDNDHETQVVKFTAEIPKTVSSIPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTSSSNQDSTDQSASKKRRKRPANSDYVDVNDAVSVSASASASNGCVQAATVAGSPAVQQPFPPGFVPVWAIPSNAIIPGAVFMVPSVDCSSTRPQFFSFPTPAAPLINTTARPISTVPSKLHTSHIQANTTNQSSSTSNSSASKSESVMAPISSSTVTTNGKTTKQMLREFSLEIYDKEELQFMSRSSERMKTE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28336 29361 - Carg10228-RA Car17g00004 164376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00004 341 Pfam TCP family transcription factor 70 169 IPR017887 -
Car17g00004 341 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Car17g00004 341 MobiDBLite consensus disorder prediction 61 80 - -
Car17g00004 341 MobiDBLite consensus disorder prediction 158 172 - -
Car17g00004 341 MobiDBLite consensus disorder prediction 144 174 - -
Car17g00004 341 MobiDBLite consensus disorder prediction 1 17 - -
Car17g00004 341 MobiDBLite consensus disorder prediction 266 310 - -
Car17g00004 341 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00138 Car-Chr16:779917 Car17g00004 Car-Chr17:28336 9.95E-62 dispersed
Car17g00004 Car-Chr17:28336 Car18g01119 Car-Chr18:11190657 1.07E-55 dispersed
Car17g00004 Car-Chr17:28336 Car08g00823 Car-Chr8:5492001 1.12E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5011 PF03634 TCP 1.90E-30 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00004 - - cmax:111499026 578.17