Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00018 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGAGGTGCTGGTGCTCGATTCGTAGCGGATTTACCTTACACAATTAACTCCACCACCAACAATAACCCCACCGGAGGCATCGGCGGTGGCGGAAATATATCCTCCGGCGCAATCGCTCCCCCGCGCCTCATCACTCAATCCCTCACCAAATCGATGTTCAACTCCCCTGGACTGTCTCTTGCTCTTACGAACATGGATGGCGGGCAGAGAGATTTAGCTGCCCGATTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAGGAAGAGCACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCTCCGGCGATGACCAGGACGCTGCCGACAATCCTCCGAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTTTTTAAAGAGTGCCCTCATCCTGATGAGAAACAACGCCTCGAGTTGAGTAGGAGGCTGTGTTTAGAAACTAGACAAGTTAAATTTTGGTTCCAAAACCGGAGGACCCAAATGAAGACCCAGTTGGAACGCCATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAATCCAATCTGTTCGAATTGCGGCGGTCCGGCGATTATCGGAGAAATCTCGCTGGAAGAGCAGCAGTTAAGGATTGATAATGCTCGGTTGAAGGATGAGTTGGACCGGGTTTGTGCACTTGCTGGGAAGTTTCTCGGCAGACCAATTTTGTCACTGGCAAACTCCATTGCACCTCCATTGCCGAGCTCAAGTCTGGAACTGGGAGTTGGGAGTAATGGATTTGGTAGCTTGACCATGGCGACTTCAATGCCTATTGGACCGGATTTTGGAGGTGGGTTGTCGGGTAATCTGGCTGTCGTTCAGCCACCTGTGAGGCCAACACCGGGGACAGGACTTGATCGTTCAGTTGAACGATCTATGCTACTAGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACTGATGAGCCACTTTGGATTGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAAGAATACATGAGGACATTCACTCCTTGCATTGGCATGAAATCGAATGGTTTCGTGACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAACAGCTTGGCTCTTGTCGAGACATTGATGGACTCGAATCGATGGGCTGAGATGTTTCCATGTCTGATTGCTCGAACGACGACCATTGATGTGATCTCCAGTGGCATGGGGGGAAGTAGGAATGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCACCTTTGGTGCCAGTCCGGGAAGTCAGTTTTCTACGGTTCTGCAAGCAGCATGCCGAAGGGGTATGGGCAGTCGTGGACGTATCGGTTGATGCCATGAGAGAGACGCCAGCTGGTGGTGGTTCGCCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTACAAGACATGCCCAATGGGTATTCCAAGGTTACGTGGGTGGAACATGCAGACTACGATGATAGCCAAGTCCACCAGCTCTACCGTCCCCTACTCAGCTCCGGCATGGGCTTCGGAGCACAACGGTGGGTTGCCACCCTTCAACGGCAATGTGAATGCCTCGCCATTCTCATGTCATCAGCTGCTCCAATACGAGACCACACCGCCATAACTGCGGGCGGGAGGCGGAGCATGCTGAAGCTAGCGCAACGAATGACAGCCAACTTCTGCGCAGGCGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCCGGGAGCGTCGATGAGGACGTCCGTGTCATGACACGAAAGAGCGTGGACGATCCTGGGGAACCTCCAGGCATTGTGTTGAGTGCAGCTACGTCGGTGTGGCTCCCGGTATCGCCCCAACGACTTTTTGATTTCCTCCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCTCATATCGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCCGGCTCCCTTGTGGTCTACGCGCCGGTCGACATTCCGGCAATGCACGTAGTGATGAATGGCGGCGATTCTGCGTACGTGGCGCTTTTGCCTTCAGGGTTTGCGATTGTGGCTGACGGCGCGGTGACAGGTGGGAGGAGTCCGAGTGGCGGGGAGGGAGGGCGGCAGGGCGAGAGAGGGACAGGCGGTGGGTCCCTTCTCACCGTGGCATTTCAAATCCTGGTGAATAGCCTCCCTACAGCGAAGCTCACCGTGGAATCGGTTGAAACAGTCAACAATCTCATCTCTTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGCGAAACCTGA 2499 53.58 MSFGGFLDGGGGGGAGARFVADLPYTINSTTNNNPTGGIGGGGNISSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQRDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIDNARLKDELDRVCALAGKFLGRPILSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQPPVRPTPGTGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKSNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCLIARTTTIDVISSGMGGSRNGALQLMHAELQVLSPLVPVREVSFLRFCKQHAEGVWAVVDVSVDAMRETPAGGGSPFINCRRLPSGCVVQDMPNGYSKVTWVEHADYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAAPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVADGAVTGGRSPSGGEGGRQGERGTGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 71992 76784 + Carg10214-RA Car17g00018 164390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00018 832 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Car17g00018 832 Pfam START domain 339 565 IPR002913 GO:0008289
Car17g00018 832 Coils Coil 182 214 - -
Car17g00018 832 MobiDBLite consensus disorder prediction 88 138 - -
Car17g00018 832 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Car17g00018 832 ProSiteProfiles START domain profile. 330 568 IPR002913 GO:0008289
Car17g00018 832 MobiDBLite consensus disorder prediction 88 111 - -
Car17g00018 832 Pfam Homeodomain 131 186 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car14g01815 Car17g00018 CCT
Car14g01815 Car17g00018 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00093 Car-Chr1:493244 Car17g00018 Car-Chr17:71992 0 dispersed
Car02g00137 Car-Chr2:798512 Car17g00018 Car-Chr17:71992 0 dispersed
Car03g00472 Car-Chr3:5043138 Car17g00018 Car-Chr17:71992 0 dispersed
Car07g00253 Car-Chr7:1378530 Car17g00018 Car-Chr17:71992 0 dispersed
Car08g00597 Car-Chr8:3874810 Car17g00018 Car-Chr17:71992 4.25E-162 dispersed
Car11g01520 Car-Chr11:12241544 Car17g00018 Car-Chr17:71992 0 dispersed
Car13g00931 Car-Chr13:9550277 Car17g00018 Car-Chr17:71992 0 dispersed
Car14g01815 Car-Chr14:14156770 Car17g00018 Car-Chr17:71992 0 dispersed
Car17g00018 Car-Chr17:71992 Car18g01138 Car-Chr18:11310355 0 dispersed
Car08g00802 Car-Chr8:5391338 Car17g00018 Car-Chr17:71992 1.84E-62 transposed
Car17g00018 Car-Chr17:71992 Car08g00801 Car-Chr8:5389491 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5012 PF01852 START 7.60E-59 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00018 K09338 - csv:101222248 1470.29