Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00027 ATGGAGTTCGATATGGATAGAATTACACCCCACACTCGCCCTCTTCCACCTCCTTTCCTCTCCAAAGATCTTCATCTCCACCACCGCCAAAACTCCGATGACGACCAAAGCGGCGGAGCTAAAAGGGATGGGGAGGAGGAAAATCCCATCACCGCGCCGGAGGCTAAAGAGTTATCCAATTCTTCTTCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATCACTAGAGACAGCGCCAACGCCCTCAGATCTCATCTCATCGAAATCTCCACCGCCTCCGACATCGTGGATACCCTCGCCGCCTTCGCGCGTAGGCGTCAGCGTGGCGTTTGTATCTTAAGCGCCACTGGAACCGTCGCCAACGTCACTCTCCGACAGCCAGCCTCCCCCGCCGCGGTCATCTCCTTACATGGCAGATTTGAAATTCTCTCCCTATCCGGCTCCTTCCTCCCGCCGCCGGCTCCCCCTGCCGCCTCCGGGCTGACCGTCTACTTAGCCGGTGGGCAGGGGCAGGTCGTCGGCGGGAATGTCATCGGCCCACTTCTGGCGTCCGGTCCGGTGATTATTATGGCAGCTTCATTTGGAAATGCTGCATACGAACGGCTACCCATTGACGAGGAAGACGAAACTTCACCCGCGGCGGAGATGGCGGGAGAACAGGCAGCACCGCCGCCGCCGCAATTGTTGGGGGATCCGAATGGGGGATTGTTTGATGGTGTGAATTCTTCATGCCAATTAGCGGCGGAGGCGGCGTATTGGGGAGGAGGTCGGCCACCGTTTTGA 810 58.15 MEFDMDRITPHTRPLPPPFLSKDLHLHHRQNSDDDQSGGAKRDGEEENPITAPEAKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDTLAAFARRRQRGVCILSATGTVANVTLRQPASPAAVISLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLLASGPVIIMAASFGNAAYERLPIDEEDETSPAAEMAGEQAAPPPPQLLGDPNGGLFDGVNSSCQLAAEAAYWGGGRPPF 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 118146 118955 - Carg10205-RA Car17g00027 164399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00027 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 204 IPR005175 -
Car17g00027 269 ProSiteProfiles PPC domain profile profile. 88 225 IPR005175 -
Car17g00027 269 MobiDBLite consensus disorder prediction 22 52 - -
Car17g00027 269 MobiDBLite consensus disorder prediction 217 245 - -
Car17g00027 269 MobiDBLite consensus disorder prediction 1 82 - -
Car17g00027 269 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01063 Car-Chr15:8368800 Car17g00027 Car-Chr17:118146 3.28E-86 dispersed
Car17g00027 Car-Chr17:118146 Car14g01831 Car-Chr14:14239553 2.19E-69 dispersed
Car17g00027 Car-Chr17:118146 Car06g00967 Car-Chr6:7419418 2.18E-95 wgd
Car17g00027 Car-Chr17:118146 Car08g00833 Car-Chr8:5568596 4.65E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00027 - - csv:101220133 410.609