Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00028 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCCCATGTGGGGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCTGGTTGCATATTTGCGCCGTACTTCGACTCGGAGCAAGGCGCTGGGCACTTCGCCGCGGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCCAAGCTCCTCCTTCATATCCCGGTTCACAAGCGCCTCGATGCTGTCGTCACCATTTGCTACGAGTCTCAAGCCCGACTTCGAGACCCTGTCTATGGCTGCGTCGCTCACATCTTCGCTCTCCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCTCATCTAGCAACACTGGAGCTTCCGTCGCCGTCTCCGCCGCCAAATTTTGCGGTGCAACCACCGGTGTCCATCTCAGACCTGCCGTCGGCTTCCTCCCTACCGGTCACTTACGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCATCGCCAGTTCTCCAGTGGAGGAGATGGCGGTTCATCCACAACGCCGGGAGAGGGCGATCTTCAAGCCCTGGCCCGCGCACTCCTCCATAGACATGGCGGTCCGCCGTGCTCCGATGCCTCGTCGCCGCCATCGCTCTCTAAATGA 693 59.45 MSANPSTSGGGGGGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPSPPPNFAVQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQFSSGGDGGSSTTPGEGDLQALARALLHRHGGPPCSDASSPPSLSK 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 122751 124058 - Carg10204-RA Car17g00028 164400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00028 230 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
Car17g00028 230 Pfam Lateral organ boundaries (LOB) domain 24 122 IPR004883 -
Car17g00028 230 MobiDBLite consensus disorder prediction 177 230 - -
Car17g00028 230 MobiDBLite consensus disorder prediction 178 201 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00835 Car17g00028 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00752 Car-Chr6:5204724 Car17g00028 Car-Chr17:122751 5.52E-53 dispersed
Car17g00028 Car-Chr17:122751 Car19g00060 Car-Chr19:522150 1.02E-54 dispersed
Car17g00028 Car-Chr17:122751 Car17g00029 Car-Chr17:129349 1.03E-63 tandem
Car14g01786 Car-Chr14:13982357 Car17g00028 Car-Chr17:122751 3.80E-63 wgd
Car17g00028 Car-Chr17:122751 Car08g00835 Car-Chr8:5589206 1.05E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5013 PF03195 LOB 3.20E-37 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00028 K21994 - csv:101220603 372.089