Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car17g00028 | ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCCCATGTGGGGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCTGGTTGCATATTTGCGCCGTACTTCGACTCGGAGCAAGGCGCTGGGCACTTCGCCGCGGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCCAAGCTCCTCCTTCATATCCCGGTTCACAAGCGCCTCGATGCTGTCGTCACCATTTGCTACGAGTCTCAAGCCCGACTTCGAGACCCTGTCTATGGCTGCGTCGCTCACATCTTCGCTCTCCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCTCATCTAGCAACACTGGAGCTTCCGTCGCCGTCTCCGCCGCCAAATTTTGCGGTGCAACCACCGGTGTCCATCTCAGACCTGCCGTCGGCTTCCTCCCTACCGGTCACTTACGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCATCGCCAGTTCTCCAGTGGAGGAGATGGCGGTTCATCCACAACGCCGGGAGAGGGCGATCTTCAAGCCCTGGCCCGCGCACTCCTCCATAGACATGGCGGTCCGCCGTGCTCCGATGCCTCGTCGCCGCCATCGCTCTCTAAATGA | 693 | 59.45 | MSANPSTSGGGGGGGGGGGGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPSPPPNFAVQPPVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQFSSGGDGGSSTTPGEGDLQALARALLHRHGGPPCSDASSPPSLSK | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 122751 | 124058 | - | Carg10204-RA | Car17g00028 | 164400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car17g00028 | 230 | ProSiteProfiles | LOB domain profile. | 23 | 125 | IPR004883 | - | |
Car17g00028 | 230 | Pfam | Lateral organ boundaries (LOB) domain | 24 | 122 | IPR004883 | - | |
Car17g00028 | 230 | MobiDBLite | consensus disorder prediction | 177 | 230 | - | - | |
Car17g00028 | 230 | MobiDBLite | consensus disorder prediction | 178 | 201 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car08g00835 | Car17g00028 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car06g00752 | Car-Chr6:5204724 | Car17g00028 | Car-Chr17:122751 | 5.52E-53 | dispersed | |
Car17g00028 | Car-Chr17:122751 | Car19g00060 | Car-Chr19:522150 | 1.02E-54 | dispersed | |
Car17g00028 | Car-Chr17:122751 | Car17g00029 | Car-Chr17:129349 | 1.03E-63 | tandem | |
Car14g01786 | Car-Chr14:13982357 | Car17g00028 | Car-Chr17:122751 | 3.80E-63 | wgd | |
Car17g00028 | Car-Chr17:122751 | Car08g00835 | Car-Chr8:5589206 | 1.05E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5013 | PF03195 | LOB | 3.20E-37 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car17g00028 | K21994 | - | csv:101220603 | 372.089 |