Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00029 ATGAGTAGCGCCGGCGTCCACGGCGGAGGACCCTGCGGCGCGTGCAAGTTGTTGAGGAGAAAGTGTGTGAAAGGATGCATATTTGCACCCTATTTCGACTCGGAAGAAGGCGCCGCCCACTTCGCGGCGGTGCACAAGGTGTTTGGAGCTAGCAATGCCTCCAAACTCCTCCTCCGCATCCCGGCAAACAAGCGGGTGGAGGCGTGTGTTAGCCTTTGTTATGAAGCTCTGGCTAGGGTTCGGGATCCGGTGTATGGCTGTGTTGCCCATATCTTCTCCCTTCAGCAACAGGTAGTGAGCCTGCAGGCAGAGCTAGCATACATTCAAGCCAAACTTTCCACATTGCAGCGGCTACTACCGCCACCGCTACACAGCCCGTCCTCGACTGCTCGCCACAATCCTCTCCCAGAAACCACCCCGGGTTCCGATATGGGTCTGCTGCCTAATGTTCGAATGATCCTCGACCCGCTCCAAACGCAGCTAGGTTGTAATGAAACGACGAGTAGCTTTCTGAACCCAATTGATCATGAAGATGAGATGGAGGAAGATGGTGAGCTTCAATCTCTGGCTCGAGAGTTCGTTTCGAGGTATTTGCCCGGAGTAGGATTCCGGCCGCCGTGCTCTCAGATTTGA 633 55.13 MSSAGVHGGGPCGACKLLRRKCVKGCIFAPYFDSEEGAAHFAAVHKVFGASNASKLLLRIPANKRVEACVSLCYEALARVRDPVYGCVAHIFSLQQQVVSLQAELAYIQAKLSTLQRLLPPPLHSPSSTARHNPLPETTPGSDMGLLPNVRMILDPLQTQLGCNETTSSFLNPIDHEDEMEEDGELQSLAREFVSRYLPGVGFRPPCSQI 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 129349 131256 + Carg10203-RA Car17g00029 164401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00029 210 MobiDBLite consensus disorder prediction 122 136 - -
Car17g00029 210 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Car17g00029 210 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Car17g00029 210 MobiDBLite consensus disorder prediction 122 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01786 Car-Chr14:13982357 Car17g00029 Car-Chr17:129349 1.36E-52 dispersed
Car17g00029 Car-Chr17:129349 Car19g00061 Car-Chr19:528051 2.12E-50 dispersed
Car17g00028 Car-Chr17:122751 Car17g00029 Car-Chr17:129349 1.03E-63 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5014 PF03195 LOB 1.00E-35 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00029 - - csv:101220840 342.813