Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car17g00029 | ATGAGTAGCGCCGGCGTCCACGGCGGAGGACCCTGCGGCGCGTGCAAGTTGTTGAGGAGAAAGTGTGTGAAAGGATGCATATTTGCACCCTATTTCGACTCGGAAGAAGGCGCCGCCCACTTCGCGGCGGTGCACAAGGTGTTTGGAGCTAGCAATGCCTCCAAACTCCTCCTCCGCATCCCGGCAAACAAGCGGGTGGAGGCGTGTGTTAGCCTTTGTTATGAAGCTCTGGCTAGGGTTCGGGATCCGGTGTATGGCTGTGTTGCCCATATCTTCTCCCTTCAGCAACAGGTAGTGAGCCTGCAGGCAGAGCTAGCATACATTCAAGCCAAACTTTCCACATTGCAGCGGCTACTACCGCCACCGCTACACAGCCCGTCCTCGACTGCTCGCCACAATCCTCTCCCAGAAACCACCCCGGGTTCCGATATGGGTCTGCTGCCTAATGTTCGAATGATCCTCGACCCGCTCCAAACGCAGCTAGGTTGTAATGAAACGACGAGTAGCTTTCTGAACCCAATTGATCATGAAGATGAGATGGAGGAAGATGGTGAGCTTCAATCTCTGGCTCGAGAGTTCGTTTCGAGGTATTTGCCCGGAGTAGGATTCCGGCCGCCGTGCTCTCAGATTTGA | 633 | 55.13 | MSSAGVHGGGPCGACKLLRRKCVKGCIFAPYFDSEEGAAHFAAVHKVFGASNASKLLLRIPANKRVEACVSLCYEALARVRDPVYGCVAHIFSLQQQVVSLQAELAYIQAKLSTLQRLLPPPLHSPSSTARHNPLPETTPGSDMGLLPNVRMILDPLQTQLGCNETTSSFLNPIDHEDEMEEDGELQSLAREFVSRYLPGVGFRPPCSQI | 210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 129349 | 131256 | + | Carg10203-RA | Car17g00029 | 164401 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car17g00029 | 210 | MobiDBLite | consensus disorder prediction | 122 | 136 | - | - | |
Car17g00029 | 210 | Pfam | Lateral organ boundaries (LOB) domain | 11 | 109 | IPR004883 | - | |
Car17g00029 | 210 | ProSiteProfiles | LOB domain profile. | 10 | 112 | IPR004883 | - | |
Car17g00029 | 210 | MobiDBLite | consensus disorder prediction | 122 | 143 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car14g01786 | Car-Chr14:13982357 | Car17g00029 | Car-Chr17:129349 | 1.36E-52 | dispersed | |
Car17g00029 | Car-Chr17:129349 | Car19g00061 | Car-Chr19:528051 | 2.12E-50 | dispersed | |
Car17g00028 | Car-Chr17:122751 | Car17g00029 | Car-Chr17:129349 | 1.03E-63 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5014 | PF03195 | LOB | 1.00E-35 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car17g00029 | - | - | csv:101220840 | 342.813 |