Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00035 ATGGATGGACCAACTGGTCGCGGTGGTAGTGGCATGGATATGAATTTACCGAACTATAAACTTGGAAAGACCCTTGGCATAGGTTCATTTGGGAAAGTGAAAATTGCCGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAATTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGGTTGTTCATGCATCCTCACATTATACGGCTCTATGAGGTTATAGAGACTCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGATTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTAATTTTTTCCAACAGATAATCTCTGGTGTGGAGTACTGCCACAGAAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTTTAGACTCAAAATATAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGAGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCGCCAGAGGTCATCTCCGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTCATTTTGTATGCCCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATCCCTAGTATGCTGGTGGTTGACCCAATGAAGCGCATCACGATCCCTGAGATTCGCCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATTCAACAGGCGAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAAATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACAGGATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACCAGATTCAATTCTATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGGCTTCCTGGATATATGGATTATCAAGGAATGGGCCTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCTCTAGGCTTACAGTCTCGAGCTCATCCCCGTGAAATTATGACTGAAGTCCTTAAGGCCCTACGAGAGCTCAATGTGGCGTGGAAGAAGATTGGGCACTACAATATGAAATGTAGGTGGTTACCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAGCCCTGTGCATAGTAATCATTACTTCGGGGACGAGTCTACCATCATTGAAAATGATGGCGTAGTAAAATCGCCGAATGTTATTAAGTTCGAAGTTCAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTTCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCGCAGCTCCGCGTCCTCTAA 1548 43.48 MDGPTGRGGSGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTIQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETRFNSMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINSPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 161353 168700 - Carg10197-RA Car17g00035 164407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00035 515 SUPERFAMILY KA1-like 328 514 IPR028375 -
Car17g00035 515 Pfam UBA/TS-N domain 293 329 IPR015940 -
Car17g00035 515 Gene3D Kinase associated domain 1, KA1 395 513 - -
Car17g00035 515 PANTHER SERINE/THREONINE KINASE 8 514 - -
Car17g00035 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Car17g00035 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Car17g00035 515 SMART uba_6 294 331 IPR015940 -
Car17g00035 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Car17g00035 515 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00035 515 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515
Car17g00035 515 Gene3D Transferase(Phosphotransferase) domain 1 11 352 - -
Car17g00035 515 SUPERFAMILY Protein kinase-like (PK-like) 16 289 IPR011009 -
Car17g00035 515 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Car17g00035 515 CDD STKc_AMPK_alpha 16 271 - -
Car17g00035 515 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car17g00035 515 CDD UBA_SnRK1_plant 293 333 - -
Car17g00035 515 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 514 - -
Car17g00035 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Car17g00035 515 CDD AMPKA_C 389 512 - -
Car17g00035 515 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00035 Car-Chr17:161353 Car02g00982 Car-Chr2:6959053 6.73E-92 dispersed
Car17g00559 Car-Chr17:5214311 Car17g00035 Car-Chr17:161353 6.60E-28 dispersed
Car20g00423 Car-Chr20:2369686 Car17g00035 Car-Chr17:161353 1.23E-37 dispersed
Car17g00035 Car-Chr17:161353 Car08g00841 Car-Chr8:5631382 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89458 PF00069 Pkinase 2.00E-80 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00035 K07198 - csv:101211720 1001.12