Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car17g00040 ATGAAATTGGAGAAATTTGGAGAGAAACGAGGAGCACAGTTTCTCTCTCTTCGAATCCTCCCCACAGGTCGTTGCGCTCTCCCTTCACCAGCAAGCATTCAGCAATTTCTTCATCAGATCTACACTCTCCACCGCCCTCATTCTCAGTTGAACATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAAGTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATCCAGGAGAGAGAGCACAACAAACAAAAGAGTTGCTCGCTTCCTGTGAGAGTATTGAATGGCAGGTGGACGAATTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATCATGCTGAACTTGAGAAACGAAGGAGGTGGACGAGTACAGCTAGGATGCAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGAAAGGAGCAAACTGGAACTGCTGGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCCAATGCACTTGAAACAGAAAAATCAAACTTATATACAGCCCACCAAGAAAATGATGACTTTATCTCATCCGAATCAGATAGACAGCTGCTTCTAATAAGGCAGCAGGACGAGGAGTTGGATGAATTGAGTGCGAGTGTGGTGAGAATTGGAGGTGTTGGGCTCACAATACATGAAGAGCTCCTTGCACAGGATAAAATTATTGACAACCTAGGAATGGAAATGGACAGTACATCGAATCGTCTTGATTTTGTTCAGCTCTGA 789 44.36 MKLEKFGEKRGAQFLSLRILPTGRCALPSPASIQQFLHQIYTLHRPHSQLNMPSAQDPFYVVKDEIQESIDKVQSSFHQWERISSDPGERAQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDHAELEKRRRWTSTARMQVGNVKKVVGAGKEQTGTAGASGMRRELMRLPNALETEKSNLYTAHQENDDFISSESDRQLLLIRQQDEELDELSASVVRIGGVGLTIHEELLAQDKIIDNLGMEMDSTSNRLDFVQL 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 193371 196392 - Carg10192-RA Car17g00040 164412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car17g00040 262 SUPERFAMILY SNARE fusion complex 204 260 - -
Car17g00040 262 CDD SNARE_Qc 208 261 - -
Car17g00040 262 ProSitePatterns Syntaxin / epimorphin family signature. 211 250 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car17g00040 262 PANTHER SYNTAXIN PROTEIN 52 261 - -
Car17g00040 262 Gene3D - 53 155 - -
Car17g00040 262 Gene3D - 207 261 - -
Car17g00040 262 Pfam Syntaxin 6, N-terminal 57 150 IPR015260 GO:0016020|GO:0048193
Car17g00040 262 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 262 IPR000727 -
Car17g00040 262 SUPERFAMILY t-snare proteins 56 151 IPR010989 GO:0016020|GO:0016192
Car17g00040 262 PANTHER SYNTAXIN 52 261 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00763 Car-Chr5:5910496 Car17g00040 Car-Chr17:193371 2.08E-135 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car17g00040 K08500 - csv:101212527 377.867